SRR3551431_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551431_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	439583
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2682	0.6101236854018467	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGTACGAGTCGTATGC	2335	0.5311852369177152	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGTACGAGTCGTATGCCG	2260	0.514123612605583	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGTACGAGTCGTATGCCGTCTTC	1675	0.38104294297095204	No Hit
GCTGTCTCTTATACACATCTGACGCAGTACGAGTCGTATGCCGTCTTCTGC	995	0.2263508825409536	No Hit
GAGGAGCTGAGAACCCCAGTCTAATAATGTCCATCGACACCTCCTTATCCC	674	0.15332713048502786	No Hit
GCCAGACAAAGGTTGCCAATCTTTGTGGTATAAACCAGAAGCTAATGGCTG	440	0.10009486263117547	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGACGC	30	2.162431E-6	45.000004	19
CGACGGT	30	2.162431E-6	45.000004	28
ACGCATG	20	7.028527E-4	45.000004	1
TAGCGAA	20	7.028527E-4	45.000004	1
AGACGTC	20	7.028527E-4	45.000004	28
GTTAACG	20	7.028527E-4	45.000004	1
TTGACGT	20	7.028527E-4	45.000004	1
CGAATTG	20	7.028527E-4	45.000004	31
CAAATCG	20	7.028527E-4	45.000004	26
AATTCCG	30	2.162431E-6	45.000004	11
ACGCTCC	30	2.162431E-6	45.000004	22
TTAACGG	30	2.162431E-6	45.000004	2
TATAGCG	20	7.028527E-4	45.000004	1
TCATATG	20	7.028527E-4	45.000004	36
CCGCGGA	20	7.028527E-4	45.000004	30
ATTGCGC	20	7.028527E-4	45.000004	44
TCGACGT	20	7.028527E-4	45.000004	26
TTCGACG	20	7.028527E-4	45.000004	25
TCGAATT	20	7.028527E-4	45.000004	30
AATCGAA	20	7.028527E-4	45.000004	28