SRR3551429_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551429_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	519640
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2946	0.5669309521976753	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGC	1492	0.28712185359094755	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGCCG	1413	0.2719190208605958	No Hit
GCTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGCCGTCTTCTGC	1072	0.20629666692325455	TruSeq Adapter, Index 16 (95% over 21bp)
GAATCTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGCCGTCTTC	1070	0.20591178508197983	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	752	0.144715572319298	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCCCCGT	20	7.0297153E-4	45.0	37
GTCGACT	25	3.8878447E-5	45.0	12
ATATGCG	20	7.0297153E-4	45.0	29
CTAAGCG	20	7.0297153E-4	45.0	1
TCGATAG	20	7.0297153E-4	45.0	1
CCGTCAC	20	7.0297153E-4	45.0	11
ACGTGCG	20	7.0297153E-4	45.0	1
ACGCTAG	20	7.0297153E-4	45.0	1
ACCGTGC	20	7.0297153E-4	45.0	23
GCTACGC	20	7.0297153E-4	45.0	41
AATAGCG	50	2.1827873E-11	45.0	1
AAGGCGA	45	3.8380676E-10	45.0	6
CACAACG	85	0.0	42.35294	12
CATAGGA	50	1.0786607E-9	40.5	4
CGTTTTT	1400	0.0	40.017857	1
GTTACGG	45	1.9248546E-8	40.0	2
CTCGCGT	45	1.9248546E-8	40.0	12
GCGATAT	45	1.9248546E-8	40.0	9
TCGTTCA	40	3.4533514E-7	39.375	16
ACGCTTT	35	6.241682E-6	38.571426	34