##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551429_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 519640 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.15109883765684 31.0 31.0 33.0 28.0 34.0 2 31.19882803479332 31.0 31.0 34.0 28.0 34.0 3 30.960976830113154 31.0 31.0 34.0 27.0 34.0 4 34.932770764375334 35.0 35.0 37.0 32.0 37.0 5 35.18199330305596 35.0 35.0 37.0 33.0 37.0 6 35.166905934877995 36.0 35.0 37.0 32.0 37.0 7 31.034766376722345 35.0 35.0 37.0 0.0 37.0 8 33.09083596335925 36.0 35.0 37.0 17.0 37.0 9 36.37889307982449 39.0 35.0 39.0 32.0 39.0 10 36.14658032484027 37.0 35.0 39.0 32.0 39.0 11 36.37442075282888 38.0 35.0 39.0 32.0 39.0 12 36.38767800785159 38.0 35.0 39.0 32.0 39.0 13 36.31842044492341 38.0 35.0 39.0 32.0 39.0 14 37.37485759371873 39.0 36.0 40.0 32.0 41.0 15 37.60424524670926 39.0 36.0 41.0 33.0 41.0 16 37.5141905934878 39.0 36.0 41.0 33.0 41.0 17 37.41130397967824 39.0 36.0 40.0 32.0 41.0 18 37.33771649603572 39.0 36.0 40.0 32.0 41.0 19 37.14407089523516 39.0 36.0 40.0 32.0 41.0 20 37.1489127087984 39.0 35.0 40.0 32.0 41.0 21 37.12552921253175 39.0 35.0 40.0 32.0 41.0 22 37.194519282580245 39.0 35.0 40.0 32.0 41.0 23 37.26398660611192 39.0 35.0 40.0 32.0 41.0 24 37.19090716649988 39.0 35.0 40.0 32.0 41.0 25 36.87832537910862 39.0 35.0 40.0 31.0 41.0 26 36.86082480178585 39.0 35.0 40.0 31.0 41.0 27 36.89286813948118 39.0 35.0 40.0 31.0 41.0 28 36.910326379801404 39.0 35.0 40.0 31.0 41.0 29 36.92200369486567 39.0 35.0 40.0 31.0 41.0 30 36.68622315449157 39.0 35.0 40.0 31.0 41.0 31 36.650192440920634 39.0 35.0 40.0 31.0 41.0 32 36.525246324378415 39.0 35.0 40.0 31.0 41.0 33 36.40605804018166 39.0 35.0 40.0 30.0 41.0 34 36.316932876606884 39.0 35.0 40.0 30.0 41.0 35 36.251195058117155 39.0 35.0 40.0 30.0 41.0 36 36.2160630436456 39.0 35.0 40.0 30.0 41.0 37 36.15082942036795 38.0 35.0 40.0 30.0 41.0 38 36.031544915710874 38.0 35.0 40.0 30.0 41.0 39 35.99065891771226 38.0 35.0 40.0 30.0 41.0 40 35.880082364714035 38.0 35.0 40.0 29.0 41.0 41 35.76035524593949 38.0 35.0 40.0 29.0 41.0 42 35.76848010160881 38.0 35.0 40.0 29.0 41.0 43 35.7296493726426 38.0 35.0 40.0 29.0 41.0 44 35.53516857824648 38.0 34.0 40.0 28.0 41.0 45 35.44572011392503 38.0 34.0 40.0 28.0 41.0 46 35.339103995073515 38.0 34.0 40.0 27.0 41.0 47 35.29512932029867 38.0 34.0 40.0 27.0 41.0 48 35.23846316680779 38.0 34.0 40.0 27.0 41.0 49 35.14340504964976 37.0 34.0 40.0 27.0 41.0 50 35.00934108228774 37.0 34.0 40.0 27.0 41.0 51 33.37695904857209 35.0 32.0 39.0 22.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 3.0 8 19.0 9 45.0 10 60.0 11 39.0 12 34.0 13 27.0 14 31.0 15 36.0 16 73.0 17 129.0 18 269.0 19 460.0 20 791.0 21 1121.0 22 1625.0 23 2320.0 24 3393.0 25 4616.0 26 5910.0 27 7031.0 28 7782.0 29 9251.0 30 11438.0 31 14572.0 32 19046.0 33 27170.0 34 42741.0 35 47402.0 36 52431.0 37 77152.0 38 101147.0 39 81473.0 40 3.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.731390962974366 21.896505272881225 23.809560464937267 12.562543299207144 2 33.31440997613733 24.322800400277114 26.00819798321915 16.354591640366408 3 32.729389577399736 23.882110692017548 27.882187668385804 15.506312062196907 4 29.407474405357554 24.79562774228312 27.176314371487955 18.62058348087137 5 26.350357940112385 30.01019936879378 25.202640289431145 18.43680240166269 6 26.262027557539835 35.492456315911014 24.389962281579557 13.855553844969595 7 69.05877145716265 18.278615964898776 9.226387499037795 3.4362250789007773 8 80.41394042029097 6.474482333923485 9.190593487799244 3.9209837579862983 9 73.73835732430145 8.739511969825262 11.126356708490494 6.395773997382803 10 41.95423754907244 25.807482102994385 18.501462550996845 13.73681779693634 11 33.24859518127934 25.669309521976754 24.0610807482103 17.0210145485336 12 30.30578862289277 22.53098298822262 28.558425063505506 18.60480332537911 13 24.800053883457778 25.306173504734048 30.075051959048572 19.818720652759602 14 19.876452928950812 29.098606727734584 29.803710260949888 21.221230082364713 15 20.485528442768068 25.837310445693173 33.96967131090755 19.707489800631205 16 23.147178816103455 25.297321222384728 31.449080132399352 20.10641982911246 17 22.556577630667384 23.954083596335927 29.86856285120468 23.62077592179201 18 23.848241089985375 25.8276883996613 29.046455238241858 21.27761527211146 19 25.045800939111697 26.935185897929337 27.460164729428065 20.558848433530905 20 27.513085982603343 25.756100377184204 27.36048033253791 19.370333307674546 21 25.250942960511125 27.258486644600104 27.83099838349627 19.659572011392505 22 22.988030174736355 25.875606188900008 28.21761219305673 22.918751443306903 23 23.28054037410515 26.72196135786314 28.38984681702717 21.607651451004543 24 23.859210222461705 24.126895543068276 30.428950812100688 21.58494342236933 25 22.657993995843277 26.496997921638055 28.66080363328458 22.184204449234084 26 21.573204526210453 28.154684012008314 27.91701947502117 22.355091986760065 27 21.808367331229313 27.548495112000616 28.63540143176045 22.00773612500962 28 19.40420290970672 28.024593949657454 30.970864444615504 21.600338696020323 29 21.84050496497575 27.355091986760065 28.975252097606035 21.829150950658146 30 21.988492032945885 26.46447540605034 29.42171503348472 22.12531752751905 31 23.648872296205063 26.75583095989531 27.718035563082132 21.877261180817488 32 24.5369871449465 28.690439535062733 26.247594488492034 20.52497883149873 33 23.64848741436379 27.204025864059734 26.242206142714185 22.90528057886229 34 21.239896851666536 28.1541066892464 28.193749518897697 22.412246940189362 35 21.452351628050188 27.584481564159802 27.29735971056886 23.665807097221155 36 22.234623970441074 29.35436071126164 26.20833654068201 22.202678777615272 37 21.53471634208298 28.804941882841966 27.659341082287735 22.001000692787315 38 22.220575783234548 29.373219921484107 26.00992995150489 22.396274343776458 39 23.36001847432838 26.599953814179045 26.547225001924406 23.49280270956816 40 23.65137402817335 26.374990377953967 27.751712724193673 22.22192286967901 41 20.048687552921255 26.625933338465092 27.920868293433916 25.404510815179737 42 20.86964052036025 27.422638749903776 27.30236317450543 24.405357555230545 43 22.43707181895158 25.604649372642598 27.63413132168424 24.324147486721575 44 21.388461242398584 26.919405742437068 27.77172657993996 23.920406435224386 45 21.28800708182588 27.090485720883688 26.907474405357558 24.714032791932876 46 22.417057963205295 28.67292741128474 25.68701408667539 23.22300053883458 47 21.05784774074359 27.570048495111998 28.14698637518282 23.22511738896159 48 21.211030713570935 26.05553844969594 29.106881687321994 23.62654914941113 49 21.424255253637135 26.006658455854055 29.205026556847045 23.364059733661765 50 20.551728119467324 25.593680240166268 28.99468863059041 24.859903009775998 51 20.207836194288355 25.72300053883458 27.620275575398352 26.448887691478717 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 267.0 1 624.0 2 981.0 3 3233.5 4 5486.0 5 3763.5 6 2041.0 7 1902.5 8 1764.0 9 1655.5 10 1547.0 11 1570.5 12 1594.0 13 1512.0 14 1430.0 15 1335.5 16 1241.0 17 1289.0 18 1337.0 19 1477.5 20 1618.0 21 1864.5 22 2111.0 23 2412.0 24 2713.0 25 3124.0 26 4527.0 27 5519.0 28 6615.5 29 7712.0 30 8983.5 31 10255.0 32 11753.0 33 13251.0 34 14564.5 35 15878.0 36 16424.5 37 16971.0 38 18212.0 39 19453.0 40 23458.5 41 27464.0 42 29381.5 43 31299.0 44 33220.0 45 35141.0 46 39318.5 47 43496.0 48 42357.0 49 41218.0 50 39341.5 51 37465.0 52 33904.0 53 30343.0 54 28304.5 55 26266.0 56 24731.0 57 23196.0 58 22973.5 59 22751.0 60 22790.5 61 22830.0 62 21224.5 63 19619.0 64 16887.5 65 14156.0 66 11470.5 67 8785.0 68 7850.0 69 6915.0 70 5655.5 71 4396.0 72 3740.5 73 3085.0 74 2610.5 75 1587.0 76 1038.0 77 805.5 78 573.0 79 455.0 80 337.0 81 257.5 82 178.0 83 139.0 84 100.0 85 77.5 86 55.0 87 50.0 88 45.0 89 39.0 90 33.0 91 21.5 92 10.0 93 5.5 94 1.0 95 1.0 96 1.0 97 2.5 98 4.0 99 2.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 519640.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 30.583932668683378 #Duplication Level Percentage of deduplicated Percentage of total 1 73.67383216988799 22.532355225277335 2 9.180927484369482 5.6157773603604175 3 3.5325425738644602 3.241171326849844 4 2.136806752305773 2.6140781535403104 5 1.5023611256560778 2.297405575555642 6 1.0979468989971934 2.014772041963192 7 0.790625919392287 1.6926314919366718 8 0.637457115024259 1.559675638806007 9 0.5247768017933953 1.4444764534922583 >10 6.5900077824151 47.61771584627701 >50 0.2831219522803746 5.269691770924543 >100 0.045826834848042904 2.4212512450588193 >500 6.277648609320946E-4 0.14438037715361446 >1k 0.003138824304660473 1.534617492804309 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2946 0.5669309521976753 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGC 1492 0.28712185359094755 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGCCG 1413 0.2719190208605958 No Hit GCTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGCCGTCTTCTGC 1072 0.20629666692325455 TruSeq Adapter, Index 16 (95% over 21bp) GAATCTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGCCGTCTTC 1070 0.20591178508197983 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 752 0.144715572319298 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.09525825571549534 0.0 2 0.0 0.0 0.0 0.5253637133400046 0.0 3 0.0 0.0 0.0 0.6837425910245555 0.0 4 0.0 0.0 0.0 0.9369948425833269 0.0 5 0.0 0.0 0.0 1.7502501731968285 0.0 6 0.0 0.0 0.0 2.1322454006619966 0.0 7 0.0 0.0 0.0 2.542144561619583 0.0 8 0.0 0.0 0.0 3.2401277807713034 0.0 9 0.0 0.0 0.0 3.4891463320760527 0.0 10 0.0 0.0 0.0 4.3557077977061045 0.0 11 0.0 0.0 0.0 5.157801554922639 0.0 12 0.0 0.0 0.0 6.077284273727965 0.0 13 0.0 0.0 0.0 6.362674159033177 0.0 14 0.0 0.0 0.0 6.4833346162728045 0.0 15 0.0 0.0 0.0 6.734854899545839 0.0 16 0.0 0.0 0.0 7.220768224155185 0.0 17 0.0 0.0 0.0 7.794627049495805 0.0 18 0.0 0.0 0.0 8.425063505503811 0.0 19 0.0 0.0 0.0 8.780309445000384 0.0 20 0.0 0.0 0.0 9.146332076052651 0.0 21 0.0 0.0 0.0 9.572203833423139 0.0 22 0.0 0.0 0.0 10.024247556000308 0.0 23 0.0 0.0 0.0 10.47167269648218 0.0 24 0.0 0.0 0.0 10.85944115156647 0.0 25 0.0 0.0 0.0 11.200831344777153 0.0 26 0.0 0.0 0.0 11.512970518050958 0.0 27 0.0 0.0 0.0 11.829343391578785 0.0 28 0.0 0.0 0.0 12.164575475329073 0.0 29 0.0 0.0 0.0 12.512893541682704 0.0 30 0.0 0.0 0.0 12.910668924640136 0.0 31 0.0 0.0 0.0 13.281887460549612 0.0 32 0.0 0.0 0.0 13.63251481795089 0.0 33 0.0 0.0 0.0 13.976791624971133 0.0 34 0.0 0.0 0.0 14.328958509737511 0.0 35 0.0 0.0 0.0 14.728080979139405 0.0 36 0.0 0.0 0.0 15.094296051112309 0.0 37 0.0 0.0 0.0 15.462243091370949 0.0 38 0.0 0.0 0.0 15.827880840581942 0.0 39 0.0 0.0 0.0 16.19294126703102 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCCCCGT 20 7.0297153E-4 45.0 37 GTCGACT 25 3.8878447E-5 45.0 12 ATATGCG 20 7.0297153E-4 45.0 29 CTAAGCG 20 7.0297153E-4 45.0 1 TCGATAG 20 7.0297153E-4 45.0 1 CCGTCAC 20 7.0297153E-4 45.0 11 ACGTGCG 20 7.0297153E-4 45.0 1 ACGCTAG 20 7.0297153E-4 45.0 1 ACCGTGC 20 7.0297153E-4 45.0 23 GCTACGC 20 7.0297153E-4 45.0 41 AATAGCG 50 2.1827873E-11 45.0 1 AAGGCGA 45 3.8380676E-10 45.0 6 CACAACG 85 0.0 42.35294 12 CATAGGA 50 1.0786607E-9 40.5 4 CGTTTTT 1400 0.0 40.017857 1 GTTACGG 45 1.9248546E-8 40.0 2 CTCGCGT 45 1.9248546E-8 40.0 12 GCGATAT 45 1.9248546E-8 40.0 9 TCGTTCA 40 3.4533514E-7 39.375 16 ACGCTTT 35 6.241682E-6 38.571426 34 >>END_MODULE