SRR3551425_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551425_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	387815
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGCCG	6170	1.5909647641272255	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGC	5384	1.3882908087619097	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGCCGTCTTC	4710	1.214496602761626	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2514	0.648247231282957	No Hit
GCTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGCCGTCTTCTGC	1522	0.3924551654783853	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGCCGTCT	1156	0.29808027023194045	No Hit
GAACTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGCCGTCTTCT	823	0.21221458685197842	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGCCGTC	753	0.19416474349883323	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTA	706	0.18204556296172145	No Hit
GAGGAGCTGAGAACCCCAGTCTAATAATGTCCATCGACACCTCCTTATCCC	603	0.15548650774209352	No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGCCG	573	0.1477508605907456	No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGC	528	0.13614738986372368	No Hit
GAATCTATCTCTTATACACATCTGACGCAGAGTGCTTCGTATGCCGTCTTC	515	0.13279527609813957	No Hit
CCTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGCCGTCTTCTGC	392	0.10107912277761305	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	391	0.1008212678725681	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCCTAGG	20	7.027498E-4	45.000004	28
CCAATCC	20	7.027498E-4	45.000004	32
TCTAGAC	20	7.027498E-4	45.000004	28
GCGATAA	20	7.027498E-4	45.000004	9
TCATCGT	20	7.027498E-4	45.000004	17
TTACCGG	40	6.7957444E-9	45.000004	2
CACTTCG	20	7.027498E-4	45.000004	31
ACCGTTA	25	3.8860097E-5	45.0	43
CGATCAA	25	3.8860097E-5	45.0	10
GACGGGA	85	0.0	42.35294	4
ACACGGG	70	0.0	41.785713	3
AACGGCT	70	0.0	41.785713	7
GCTACGA	70	0.0	41.785713	10
TACGGCT	655	0.0	41.564884	7
CGAATAT	65	0.0	41.538464	14
CGGGATA	55	6.002665E-11	40.909092	6
TTAGCGG	50	1.0768417E-9	40.5	2
CGTTTTT	1240	0.0	40.463707	1
ACGGCTG	750	0.0	40.199997	8
CACGGGT	45	1.9226718E-8	40.0	4