SRR3551422_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551422_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	501568
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCTGTACTCCTCGTATGCCG	5867	1.1697317213219343	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGTACTCCTCGTATGC	5087	1.0142194079367106	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGTACTCCTCGTATGCCGTCTTC	5055	1.0078394155927013	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2211	0.4408175960188848	No Hit
GCTGTCTCTTATACACATCTGACGCTGTACTCCTCGTATGCCGTCTTCTGC	2134	0.42546573944111266	TruSeq Adapter, Index 23 (95% over 22bp)
GAATGACTGTCTCTTATACACATCTGACGCTGTACTCCTCGTATGCCGTCT	1172	0.23366721959933648	No Hit
GAACTGTCTCTTATACACATCTGACGCTGTACTCCTCGTATGCCGTCTTCT	1069	0.2131316192420569	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTGTACTCCTCGTATGCCGTC	823	0.1640854280974863	No Hit
CCTGTCTCTTATACACATCTGACGCTGTACTCCTCGTATGCCGTCTTCTGC	659	0.1313879673344392	TruSeq Adapter, Index 23 (95% over 22bp)
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTGTACTCCTCGTA	615	0.12261547786142657	No Hit
GAATGCTGTCTCTTATACACATCTGACGCTGTACTCCTCGTATGCCGTCTT	588	0.11723235932116882	No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCTGTACTCCTCGTATGCCG	553	0.11025424269490876	No Hit
GAATCTATCTCTTATACACATCTGACGCTGTACTCCTCGTATGCCGTCTTC	546	0.10885861936965675	No Hit
CTGTCTCTTATACACATCTGACGCTGTACTCCTCGTATGCCGTCTTCTGCT	516	0.10287737654714815	TruSeq Adapter, Index 20 (95% over 23bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGCGAA	20	7.029481E-4	45.0	31
CGACGGT	20	7.029481E-4	45.0	28
TTTGTCG	20	7.029481E-4	45.0	45
CTACGGA	20	7.029481E-4	45.0	34
CGCACGG	40	6.8012014E-9	45.0	2
ACGAGGT	20	7.029481E-4	45.0	31
TAATGCG	20	7.029481E-4	45.0	1
ACGACCA	90	0.0	42.5	28
TGGGCGA	130	0.0	41.53846	6
CGTTTTT	1195	0.0	41.23431	1
TACGGCT	520	0.0	40.673077	7
CGAGACA	95	0.0	40.263157	22
CACGGGA	135	0.0	40.0	4
TCCGATC	45	1.9244908E-8	40.0	14
ATTTGCG	40	3.453024E-7	39.375	1
ACGGCTG	600	0.0	38.625	8
TAGCGTG	35	6.241251E-6	38.571426	1
TTGTACG	35	6.241251E-6	38.571426	37
CTGATAG	35	6.241251E-6	38.571426	1
ACACGAC	100	0.0	38.25	26