SRR3551418_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551418_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	294510
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4805	1.6315235475875185	No Hit
GCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTCTGC	975	0.33105836813690537	TruSeq Adapter, Index 19 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTCTGC	914	0.3103459984380836	TruSeq Adapter, Index 19 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTCTGCT	653	0.22172421989066585	TruSeq Adapter, Index 13 (95% over 22bp)
TCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTCTGC	501	0.17011306916573293	TruSeq Adapter, Index 19 (95% over 21bp)
ACTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTCTGC	381	0.12936742385657535	TruSeq Adapter, Index 13 (95% over 21bp)
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	344	0.11680418321958508	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACACGAC	25	3.8837163E-5	45.000004	26
CACGGGT	35	1.207809E-7	45.000004	4
ACGTTGG	25	3.8837163E-5	45.000004	2
ATTCGGG	25	3.8837163E-5	45.000004	3
CACGACC	25	3.8837163E-5	45.000004	27
CGACAAT	35	1.207809E-7	45.000004	20
AGGCGAT	25	3.8837163E-5	45.000004	7
ACGGGAT	25	3.8837163E-5	45.000004	5
TCGTGCA	25	3.8837163E-5	45.000004	21
CTGCCTA	25	3.8837163E-5	45.000004	18
TCTCGCG	25	3.8837163E-5	45.000004	32
GTCAAGC	25	3.8837163E-5	45.000004	16
CGCAGTA	25	3.8837163E-5	45.000004	37
TGCCTAA	25	3.8837163E-5	45.000004	19
GACGGGT	25	3.8837163E-5	45.000004	4
GCTAGTC	25	3.8837163E-5	45.000004	27
AGACACG	25	3.8837163E-5	45.000004	24
CTCGCGC	25	3.8837163E-5	45.000004	33
GCGATAT	30	2.1599844E-6	45.000004	9
CGTACCT	25	3.8837163E-5	45.000004	45