SRR3551416_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551416_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	324980
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3400	1.0462182288140809	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCG	1028	0.316327158594375	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGC	1011	0.3110960674503046	No Hit
GCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTGC	939	0.28894085789894763	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTC	809	0.2489383962089975	No Hit
CCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTGC	724	0.22278294048864544	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	649	0.1997045972059819	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	542	0.16677949412271525	No Hit
CTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTGCT	471	0.14493199581512708	Illumina Single End Adapter 2 (95% over 21bp)
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	464	0.14277801710874516	No Hit
GCACAAGAGTGAGGAGAGCTAAAAGGACATGTAAGAAACCAATCAAGATCA	391	0.12031509631361931	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CACGACC	25	3.8846094E-5	45.000004	27
GCCTCGA	25	3.8846094E-5	45.000004	14
CTCGATC	25	3.8846094E-5	45.000004	16
TAGATCA	25	3.8846094E-5	45.000004	31
GAACCCG	25	3.8846094E-5	45.000004	1
TCGGTAC	25	3.8846094E-5	45.000004	22
CGGGTAA	20	7.02581E-4	45.0	28
CCCTCGT	85	0.0	45.0	14
ATCTAGA	20	7.02581E-4	45.0	21
TTGTCGG	20	7.02581E-4	45.0	29
GGCCGAT	45	3.8380676E-10	45.0	8
TCGATAG	20	7.02581E-4	45.0	1
TTATCCG	20	7.02581E-4	45.0	1
TCTACAC	20	7.02581E-4	45.0	17
CTACGAA	75	0.0	45.0	11
ATTGGCG	20	7.02581E-4	45.0	20
GCTACGA	75	0.0	45.0	10
TATACGG	35	1.2083365E-7	45.0	2
ACTCACG	20	7.02581E-4	45.0	24
CGAAGGC	20	7.02581E-4	45.0	4