SRR3551413_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551413_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	592104
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCG	3182	0.5374055909097051	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGC	2939	0.4963655033575183	No Hit
GAATCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTC	2398	0.40499641954791726	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2055	0.3470674070771351	No Hit
GCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTCTGC	1060	0.17902260413711105	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	933	0.15757366949049492	No Hit
CAAGGAAGGTGAAATAATCTATATCTTTTATTTTGTTTTGGTTTAATATAA	890	0.1503114317754989	No Hit
GAATGCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTT	804	0.13578695634550686	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	630	0.10640022698715092	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACTGCGC	20	7.0305116E-4	45.000004	27
TACGGAT	20	7.0305116E-4	45.000004	18
TACGGAC	20	7.0305116E-4	45.000004	34
GTATGCG	20	7.0305116E-4	45.000004	1
TGCGAAA	20	7.0305116E-4	45.000004	1
AGCGCAT	20	7.0305116E-4	45.000004	33
CGTCAGT	20	7.0305116E-4	45.000004	20
GACCGAC	25	3.888506E-5	45.0	12
ACGGGTC	30	2.1637134E-6	44.999996	5
CGAATAT	115	0.0	41.086956	14
GCTACGA	115	0.0	41.086956	10
ACAACGA	110	0.0	40.909092	13
CCGATAT	45	1.9255822E-8	40.000004	11
TACGGCT	330	0.0	39.545452	7
TATACGG	40	3.4544428E-7	39.375004	1
TACGGGT	35	6.243159E-6	38.571426	4
CGTTTTT	950	0.0	37.894737	1
CGGTAGT	125	0.0	37.800003	12
TTACACG	245	0.0	37.65306	34
CGAACGG	60	1.546141E-10	37.499996	2