##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551411_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 201625 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.98240297582145 33.0 31.0 34.0 30.0 34.0 2 32.09740855548667 33.0 31.0 34.0 30.0 34.0 3 31.890881587104772 33.0 31.0 34.0 30.0 34.0 4 35.69835585864848 37.0 35.0 37.0 33.0 37.0 5 35.812195908245506 37.0 35.0 37.0 35.0 37.0 6 35.8054457532548 37.0 35.0 37.0 35.0 37.0 7 26.875848729076257 35.0 10.0 37.0 0.0 37.0 8 31.212548047117174 36.0 19.0 37.0 17.0 37.0 9 36.00572349659021 39.0 32.0 39.0 32.0 39.0 10 36.68586236825791 38.0 35.0 39.0 33.0 39.0 11 37.04420086794792 39.0 37.0 39.0 34.0 39.0 12 37.109787972721634 39.0 37.0 39.0 34.0 39.0 13 37.0814730316181 39.0 37.0 39.0 33.0 39.0 14 38.316012399256046 40.0 38.0 41.0 34.0 41.0 15 38.37687786732796 40.0 38.0 41.0 34.0 41.0 16 38.32029758214507 40.0 37.0 41.0 34.0 41.0 17 38.222169869807814 40.0 37.0 41.0 34.0 41.0 18 38.10188716676999 40.0 37.0 41.0 33.0 41.0 19 37.9438611283323 40.0 37.0 41.0 33.0 41.0 20 37.96628890266584 40.0 36.0 41.0 34.0 41.0 21 37.89821698698078 40.0 36.0 41.0 33.0 41.0 22 37.901867327960325 40.0 36.0 41.0 33.0 41.0 23 37.81828642281463 40.0 36.0 41.0 33.0 41.0 24 37.74605827650341 40.0 36.0 41.0 33.0 41.0 25 37.64885802851829 40.0 36.0 41.0 33.0 41.0 26 37.51981649101054 39.0 35.0 41.0 33.0 41.0 27 37.39227278363298 39.0 35.0 41.0 33.0 41.0 28 37.36379417234966 39.0 35.0 41.0 33.0 41.0 29 37.31953874767514 39.0 35.0 41.0 32.0 41.0 30 37.21149163050217 39.0 35.0 41.0 32.0 41.0 31 37.1113899566026 39.0 35.0 41.0 32.0 41.0 32 36.92619962802232 39.0 35.0 41.0 31.0 41.0 33 36.78499690018599 39.0 35.0 41.0 31.0 41.0 34 36.59803099814011 39.0 35.0 41.0 30.0 41.0 35 36.44655176689399 39.0 35.0 41.0 30.0 41.0 36 36.2598884066956 39.0 35.0 41.0 30.0 41.0 37 36.19859640421575 39.0 35.0 41.0 30.0 41.0 38 36.063231246125234 39.0 35.0 41.0 29.0 41.0 39 36.020314941103535 39.0 35.0 41.0 29.0 41.0 40 35.84739491630502 39.0 35.0 40.0 28.0 41.0 41 35.76967141971482 39.0 35.0 40.0 28.0 41.0 42 35.70161934283943 38.0 35.0 40.0 27.0 41.0 43 35.63526844389337 38.0 35.0 40.0 27.0 41.0 44 35.449239925604466 38.0 35.0 40.0 26.0 41.0 45 35.321716057036575 38.0 34.0 40.0 26.0 41.0 46 35.18887042777433 38.0 34.0 40.0 26.0 41.0 47 35.073706137631746 38.0 34.0 40.0 25.0 41.0 48 35.000818350898946 38.0 34.0 40.0 25.0 41.0 49 34.835546187228765 38.0 34.0 40.0 24.0 41.0 50 34.60848605083695 37.0 34.0 40.0 24.0 41.0 51 32.579323000619965 35.0 31.0 39.0 18.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 7.0 9 18.0 10 13.0 11 4.0 12 10.0 13 3.0 14 7.0 15 12.0 16 18.0 17 53.0 18 95.0 19 133.0 20 250.0 21 400.0 22 600.0 23 916.0 24 1361.0 25 1927.0 26 2487.0 27 2759.0 28 3061.0 29 3453.0 30 3994.0 31 5148.0 32 6429.0 33 9040.0 34 13837.0 35 17313.0 36 19115.0 37 30093.0 38 37973.0 39 41085.0 40 11.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.87179169249845 19.577929324240547 23.892870427774334 14.65740855548667 2 31.335895846249223 24.07389956602604 26.78784872907626 17.80235585864848 3 32.118040917544946 23.482207067575946 28.030750154990702 16.369001859888407 4 28.4101673899566 25.844513329200247 27.369621822690636 18.37569745815251 5 24.855548667079972 30.462492250464972 26.54135151890887 18.140607563546187 6 26.323620582765034 35.29373837569746 24.831246125232486 13.551394916305021 7 61.92783632982021 27.85269683818971 6.715437073775574 3.5040297582145072 8 84.14035957842529 4.568381897086175 8.03620582765034 3.25505269683819 9 77.5826410415375 7.470303781773094 10.033973961562307 4.913081215127092 10 41.748791072535646 26.70898946063236 17.502293862368255 14.039925604463733 11 32.00099194048357 26.232362058276504 24.460260384376937 17.306385616862986 12 29.464104153750775 22.98425294482331 28.156230626162433 19.395412275263485 13 24.74296342219467 25.181401115933046 29.42492250464972 20.650712957222567 14 21.1863608183509 27.600743955362677 29.18090514569126 22.031990080595165 15 20.641785492870426 25.780037197768134 33.60743955362678 19.970737755734653 16 23.892870427774334 24.429014259144452 32.08133911965282 19.596776193428393 17 23.218350898946063 24.90911345319281 28.325852448853066 23.546683199008058 18 24.659640421574704 25.67588344699318 28.82083075015499 20.843645381277124 19 25.930316181029138 26.941599504029757 26.26807191568506 20.860012399256046 20 27.70142591444513 25.688282703037817 26.577557346559207 20.03273403595784 21 25.389212647241166 27.115189088654677 27.470303781773094 20.02529448233106 22 24.69882207067576 24.775201487910724 26.804711717296964 23.72126472411655 23 23.991568505889646 26.657408555486672 27.507005579665222 21.84401735895846 24 23.52238065716057 24.77371357718537 29.867823930564164 21.836081835089892 25 23.440545567265964 26.056292622442655 27.74804711717297 22.755114693118415 26 22.50663360198388 27.951394916305023 27.652324860508372 21.889646621202726 27 22.935151890886544 27.02393056416615 27.7093614383137 22.331556106633602 28 21.409051456912582 27.723744575325483 29.38276503409795 21.48443893366398 29 22.743707377557346 26.650464972101673 28.437445753254803 22.168381897086174 30 22.830502169869806 26.471419714817113 28.243025418474893 22.45505269683819 31 24.13837569745815 26.31320520768754 26.224426534407936 23.323992560446374 32 24.40024798512089 27.563546187228766 26.30874147551147 21.727464352138874 33 24.533168009919404 27.88791072535648 25.809299442033478 21.769621822690638 34 22.5230006199628 27.21983880967142 27.364662120272783 22.892498450092994 35 22.50663360198388 26.70402975821451 27.945443273403598 22.843893366398017 36 22.30328580285183 29.47303161810291 26.136639801611906 22.087042777433354 37 22.33254804711717 29.573217606943587 26.356850588964665 21.73738375697458 38 22.288406695598265 28.82827030378177 26.672287662740235 22.21103533787973 39 22.799752014879108 27.7163050216987 26.458028518288902 23.025914445133292 40 22.6529448233106 26.335523868567883 28.507873527588345 22.503657780533167 41 20.601115933044017 27.166769993800372 27.938995660260385 24.293118412895225 42 22.29237445753255 27.528828270303784 26.893490390576563 23.285306881587108 43 22.523992560446374 27.319032858028518 26.527960322380657 23.62901425914445 44 21.768133911965283 27.788220706757592 26.619714817110975 23.82393056416615 45 21.89807811531308 26.906881587104774 26.591940483570987 24.60309981401116 46 22.225418474891505 28.499938003719777 25.761686298822074 23.512957222566648 47 22.10737755734656 27.3264724116553 27.366646001239925 23.199504029758213 48 21.849473031618103 26.392064476131434 27.685554866707996 24.072907625542467 49 21.562802231866087 27.215871047737135 27.733168009919407 23.48815871047737 50 19.930068195908245 27.0154990700558 27.8735275883447 25.180905145691256 51 19.927092374457533 27.082455052696837 27.338871667699937 25.651580905145693 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 98.0 1 223.5 2 349.0 3 1329.0 4 2309.0 5 1642.5 6 976.0 7 832.5 8 689.0 9 677.0 10 665.0 11 641.5 12 618.0 13 637.0 14 656.0 15 645.5 16 635.0 17 600.0 18 565.0 19 578.5 20 592.0 21 612.5 22 633.0 23 838.0 24 1043.0 25 1192.5 26 1723.5 27 2105.0 28 2467.5 29 2830.0 30 3177.5 31 3525.0 32 4020.0 33 4515.0 34 5215.5 35 5916.0 36 6276.5 37 6637.0 38 7070.0 39 7503.0 40 8471.0 41 9439.0 42 10371.5 43 11304.0 44 12321.0 45 13338.0 46 14232.0 47 15126.0 48 15426.0 49 15726.0 50 15201.0 51 14676.0 52 13547.0 53 12418.0 54 11823.0 55 11228.0 56 10722.0 57 10216.0 58 10138.5 59 10061.0 60 10051.5 61 10042.0 62 8838.5 63 7635.0 64 6386.5 65 5138.0 66 4406.5 67 3675.0 68 3082.0 69 2489.0 70 2015.0 71 1541.0 72 1347.0 73 1153.0 74 1042.0 75 718.5 76 506.0 77 426.0 78 346.0 79 264.0 80 182.0 81 161.0 82 140.0 83 97.5 84 55.0 85 40.0 86 25.0 87 21.5 88 18.0 89 14.0 90 10.0 91 7.0 92 4.0 93 3.0 94 2.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 201625.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 48.76825790452573 #Duplication Level Percentage of deduplicated Percentage of total 1 70.64853705417526 34.45406075635462 2 10.239095282164977 9.986856788592686 3 5.3534562540044135 7.832362058276503 4 3.642872397766681 7.106261624302541 5 2.4357005562957013 5.939243645381278 6 1.8631329516215969 5.451704897706137 7 1.456335363931292 4.97160570365778 8 1.1247953299636932 4.388344699318041 9 0.8858017471956392 3.887910725356478 >10 2.332984165403899 14.728332300061997 >50 0.01220392763070915 0.4141351518908865 >100 0.00406797587690305 0.2792312461252325 >500 0.0 0.0 >1k 0.0010169939692257625 0.5599504029758215 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1129 0.5599504029758215 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.05802851828890267 0.0 2 0.0 0.0 0.0 0.24748915065096094 0.0 3 0.0 0.0 0.0 0.3660260384376937 0.0 4 0.0 0.0 0.0 0.49001859888406696 0.0 5 0.0 0.0 0.0 0.8867947923124613 0.0 6 0.0 0.0 0.0 1.244885306881587 0.0 7 0.0 0.0 0.0 1.5176689398636083 0.0 8 0.0 0.0 0.0 2.1961562306261624 0.0 9 0.0 0.0 0.0 2.4991940483570985 0.0 10 0.0 0.0 0.0 3.1047737135771856 0.0 11 0.0 0.0 0.0 3.7902045877247366 0.0 12 0.0 0.0 0.0 4.290638561686299 0.0 13 0.0 0.0 0.0 4.530192188468692 0.0 14 0.0 0.0 0.0 4.630378177309361 0.0 15 0.0 0.0 0.0 4.807935523868568 0.0 16 0.0 0.0 0.0 5.159578425294482 0.0 17 0.0 0.0 0.0 5.582641041537507 0.0 18 0.0 0.0 0.0 6.066212027278364 0.0 19 0.0 0.0 0.0 6.3528828270303785 0.0 20 0.0 0.0 0.0 6.651952882827031 0.0 21 0.0 0.0 0.0 7.05914445133292 0.0 22 0.0 0.0 0.0 7.44649721016739 0.0 23 0.0 0.0 0.0 7.878487290762554 0.0 24 0.0 0.0 0.0 8.223186608803472 0.0 25 0.0 0.0 0.0 8.541103533787973 0.0 26 0.0 0.0 0.0 8.841661500309982 0.0 27 0.0 0.0 0.0 9.120892746435214 0.0 28 0.0 0.0 0.0 9.45368877867328 0.0 29 0.0 0.0 0.0 9.769125852448854 0.0 30 0.0 0.0 0.0 10.147055176689399 0.0 31 0.0 0.0 0.0 10.463484190948543 0.0 32 0.0 0.0 0.0 10.805207687538747 0.0 33 0.0 0.0 0.0 11.148915065096094 0.0 34 0.0 0.0 0.0 11.46633601983881 0.0 35 0.0 0.0 0.0 11.82492250464972 0.0 36 0.0 0.0 0.0 12.18152510849349 0.0 37 0.0 0.0 0.0 12.52275263484191 0.0 38 0.0 0.0 0.0 12.867451952882828 0.0 39 0.0 0.0 0.0 13.243397396156231 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGATGGT 25 3.87933E-5 45.000004 10 ACAACGA 20 7.019437E-4 45.0 13 CATGGGT 40 6.7666406E-9 45.0 4 TTTCGCA 20 7.019437E-4 45.0 14 ACGTAGG 20 7.019437E-4 45.0 2 CGACTGG 20 7.019437E-4 45.0 2 CACAACG 20 7.019437E-4 45.0 12 CGTTTTT 400 0.0 42.750004 1 TACGGGA 70 0.0 41.785713 4 TATGGGC 55 6.002665E-11 40.909092 4 CGTTTTA 95 0.0 40.263157 1 TACGGGT 35 6.2226954E-6 38.571426 4 GGCGATA 70 0.0 38.571426 8 ACGGGAT 65 9.094947E-12 38.07692 5 ACGGGAG 65 9.094947E-12 38.07692 5 TTAGCGG 30 1.136586E-4 37.499996 2 TAACGGG 30 1.136586E-4 37.499996 3 CGCCCAA 85 0.0 37.058823 37 ATTTCCG 85 0.0 37.058823 32 TTGCGGG 110 0.0 36.81818 3 >>END_MODULE