SRR3551405_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551405_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	189188
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	656	0.3467450366830877	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTAGTCACCTCGTATGCCG	450	0.2378586379685815	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTAGTCACCTCGTATGC	299	0.15804385056134637	No Hit
GAATCTGTCTCTTATACACATCTGACGCTAGTCACCTCGTATGCCGTCTTC	275	0.14535805653635536	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	239	0.12632936549886883	No Hit
GCTGTCTCTTATACACATCTGACGCTAGTCACCTCGTATGCCGTCTTCTGC	201	0.10624352495929973	Illumina PCR Primer Index 3 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCTAGTCACCTCGTATGCCGTCTTCTGC	194	0.1025435017020107	RNA PCR Primer, Index 7 (95% over 23bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTGCTC	20	7.018332E-4	45.000004	31
GGATGCG	20	7.018332E-4	45.000004	8
AAGACGG	20	7.018332E-4	45.000004	2
TATGCGG	20	7.018332E-4	45.000004	2
CCACTGG	20	7.018332E-4	45.000004	2
TCGGACG	20	7.018332E-4	45.000004	1
CGCTCGT	20	7.018332E-4	45.000004	42
GACGAGG	20	7.018332E-4	45.000004	2
TATACTG	35	1.2047349E-7	45.000004	18
TAGTCCT	20	7.018332E-4	45.000004	27
ATCTACC	45	3.8198777E-10	45.0	15
TTTACGG	25	3.8784157E-5	45.0	2
TTACTAT	25	3.8784157E-5	45.0	15
AATGGGT	50	2.1827873E-11	45.0	4
CAAGGCG	25	3.8784157E-5	45.0	5
TCAACGG	25	3.8784157E-5	45.0	2
AGACCTA	30	2.1558608E-6	44.999996	32
GACCTAT	30	2.1558608E-6	44.999996	33
CTACCTT	60	3.6379788E-12	41.249996	17
AATATAC	55	6.002665E-11	40.909092	16