##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551403_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 219919 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.072135649943846 33.0 31.0 34.0 30.0 34.0 2 32.223659620132864 33.0 31.0 34.0 30.0 34.0 3 32.1159517822471 33.0 31.0 34.0 30.0 34.0 4 35.84577048822521 37.0 35.0 37.0 35.0 37.0 5 35.89655736884944 37.0 35.0 37.0 35.0 37.0 6 35.868183285664266 37.0 35.0 37.0 35.0 37.0 7 26.68526593882293 35.0 10.0 37.0 0.0 37.0 8 31.100305112336816 36.0 19.0 37.0 17.0 37.0 9 35.97434055265803 39.0 32.0 39.0 32.0 39.0 10 36.69532418754178 38.0 35.0 39.0 33.0 39.0 11 37.06514671310801 39.0 37.0 39.0 34.0 39.0 12 37.135327097704156 39.0 37.0 39.0 34.0 39.0 13 37.15263801672434 39.0 37.0 39.0 34.0 39.0 14 38.32983052851277 40.0 38.0 41.0 34.0 41.0 15 38.419627226387895 40.0 38.0 41.0 34.0 41.0 16 38.344399528917464 40.0 38.0 41.0 34.0 41.0 17 38.263606145899175 40.0 37.0 41.0 34.0 41.0 18 38.17456427139083 40.0 37.0 41.0 34.0 41.0 19 38.051164292307625 40.0 37.0 41.0 34.0 41.0 20 38.09707665094876 40.0 37.0 41.0 34.0 41.0 21 38.02364052219226 40.0 37.0 41.0 33.0 41.0 22 38.037777545368975 40.0 37.0 41.0 33.0 41.0 23 37.96477339384046 40.0 37.0 41.0 33.0 41.0 24 37.914013795988524 40.0 36.0 41.0 33.0 41.0 25 37.77924599511638 40.0 36.0 41.0 33.0 41.0 26 37.6498665417722 40.0 36.0 41.0 33.0 41.0 27 37.51210218307649 40.0 36.0 41.0 33.0 41.0 28 37.49023958821202 40.0 36.0 41.0 33.0 41.0 29 37.47857620305658 40.0 36.0 41.0 33.0 41.0 30 37.371273059626496 40.0 36.0 41.0 32.0 41.0 31 37.27506945739113 40.0 36.0 41.0 32.0 41.0 32 37.12900658878951 39.0 35.0 41.0 32.0 41.0 33 37.015310182385335 39.0 35.0 41.0 31.0 41.0 34 36.88033776072099 39.0 35.0 41.0 31.0 41.0 35 36.783161072940494 39.0 35.0 41.0 31.0 41.0 36 36.62559396868847 39.0 35.0 41.0 30.0 41.0 37 36.57062372964592 39.0 35.0 41.0 30.0 41.0 38 36.4353966687735 39.0 35.0 41.0 30.0 41.0 39 36.388365716468336 39.0 35.0 41.0 30.0 41.0 40 36.21008644091688 39.0 35.0 40.0 30.0 41.0 41 36.12826540680887 39.0 35.0 40.0 29.0 41.0 42 36.05143257290184 39.0 35.0 40.0 29.0 41.0 43 36.01767923644615 39.0 35.0 40.0 29.0 41.0 44 35.82849594623475 38.0 35.0 40.0 28.0 41.0 45 35.6785998481259 38.0 35.0 40.0 28.0 41.0 46 35.57846752668028 38.0 34.0 40.0 28.0 41.0 47 35.456736343835686 38.0 34.0 40.0 27.0 41.0 48 35.39859220894966 38.0 34.0 40.0 27.0 41.0 49 35.23295849835621 38.0 34.0 40.0 27.0 41.0 50 35.055238519636774 38.0 34.0 40.0 26.0 41.0 51 32.96870666017943 35.0 31.0 39.0 20.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 15.0 9 22.0 10 24.0 11 13.0 12 9.0 13 6.0 14 20.0 15 10.0 16 30.0 17 66.0 18 70.0 19 183.0 20 286.0 21 436.0 22 625.0 23 902.0 24 1256.0 25 1539.0 26 2043.0 27 2387.0 28 2824.0 29 3308.0 30 4133.0 31 5142.0 32 6835.0 33 9636.0 34 15075.0 35 18725.0 36 21317.0 37 34213.0 38 42489.0 39 46271.0 40 8.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.4440680432341 21.465175814731786 25.782674530167927 13.308081611866188 2 31.59026732569719 24.754568727576974 25.99411601544205 17.66104793128379 3 32.09317976163951 24.408077519450345 26.39017092656842 17.108571792341724 4 29.607719205707557 25.32705223286756 26.210104629431747 18.85512393199314 5 25.525761757738074 29.942842592045256 24.893256153401936 19.638139496814734 6 26.51885466921912 34.96741982275292 24.291671024331684 14.22205448369627 7 61.96554185859339 28.67601253188674 5.568413825090147 3.790031784429722 8 85.06450102083039 4.704004656259805 6.769765231744415 3.4617290911653837 9 79.23235373023704 7.284500202347227 8.589071430844992 4.894074636570737 10 42.80439616404222 26.135531718496356 16.275537811648835 14.784534305812594 11 31.607091701944807 27.05268758042734 23.099413875108564 18.24080684251929 12 28.894274710234225 24.196181321304664 27.42191443213183 19.487629536329283 13 24.969193202951995 24.75184045034763 29.22894338370036 21.050022963000014 14 21.090947121440166 26.805323778300195 30.039696433686945 22.064032666572693 15 20.77901409155189 25.99411601544205 31.983139246722658 21.243730646283403 16 23.701908429921925 25.020575757437967 30.679477443968008 20.598038368672103 17 24.068407004397073 24.272118370854724 28.038959798835027 23.620514825913176 18 25.31113728236305 25.738112668755313 27.648361442167342 21.30238860671429 19 26.77804100600676 26.52703950090715 25.67945470832443 21.01546478476166 20 27.98666781860594 25.429817341839495 26.3042301938441 20.279284645710465 21 25.985021758010905 26.28058512452312 27.21320122408705 20.521191893378926 22 25.310682569491494 24.6340698166143 27.034953778436606 23.0202938354576 23 24.59723807401816 26.346518490898923 27.115437956702245 21.940805478380675 24 24.20163787576335 25.012845638621496 28.312242234640937 22.473274250974224 25 23.99428880633324 25.92409023322223 27.271404471646377 22.810216488798147 26 23.41407518222618 27.259127224114334 26.283313401752462 23.04348419190702 27 22.741100132321446 27.283681719178425 27.296868392453582 22.678349756046543 28 21.46835880483269 28.197199878136953 28.05442003646797 22.28002128056239 29 23.198086568236487 27.232753877564015 27.446923640067478 22.12223591413202 30 23.470004865427725 26.24284395618387 27.704291125368886 22.58286005301952 31 24.32077264811135 26.828059421878052 25.488020589398825 23.36314734061177 32 24.58905324233013 27.295504253838914 25.698552648929834 22.41688985490112 33 24.365789222395517 27.35779991724226 25.762212450947846 22.514198409414377 34 22.70199482536752 27.345977382581772 27.867078333386385 22.084949458664326 35 23.003014746338422 27.04086504576685 27.1381736002801 22.817946607614623 36 23.45090692482232 29.223486829241672 25.49666013395841 21.828946111977594 37 23.097595023622333 29.068429740040653 25.80495546087423 22.029019775462785 38 22.988463934448593 28.398637680236817 25.798134767800875 22.81476361751372 39 23.879246449829257 26.671183481190802 26.1446259759275 23.304944093052445 40 23.748289142820767 26.138714708597256 27.823880610588443 22.289115537993535 41 21.23645524033849 26.91672843183172 28.0498729077524 23.796943420077394 42 22.81203534028438 27.42055029351716 26.079602035294812 23.68781233090365 43 23.299487538593755 26.302411342357868 26.254666490844357 24.143434628204023 44 23.02711452853096 26.32560169880729 26.81578217434601 23.831501598315743 45 23.155798271181663 26.344244926541137 26.41336128301784 24.08659551925936 46 22.489189201478727 27.330062432077263 26.55568641181526 23.62506195462875 47 22.387333518249903 27.482845956920503 27.092702313124377 23.037118211705216 48 22.343226369708844 26.100064114514886 28.02804668991765 23.52866282585861 49 22.101773834911945 26.768492035704057 27.299141956811372 23.83059217257263 50 20.851768151001053 26.768492035704057 28.33634201683347 24.043397796461424 51 21.37832565626435 25.9095394213324 27.099523006197735 25.612611916205513 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 62.0 1 251.0 2 440.0 3 742.0 4 1044.0 5 741.0 6 438.0 7 434.5 8 431.0 9 436.0 10 441.0 11 451.0 12 461.0 13 478.0 14 495.0 15 499.0 16 503.0 17 515.0 18 527.0 19 596.0 20 665.0 21 792.5 22 920.0 23 1109.5 24 1299.0 25 1422.0 26 1891.0 27 2237.0 28 2762.0 29 3287.0 30 3888.0 31 4489.0 32 4987.0 33 5485.0 34 6055.5 35 6626.0 36 7045.0 37 7464.0 38 8033.5 39 8603.0 40 9467.0 41 10331.0 42 11100.5 43 11870.0 44 12629.5 45 13389.0 46 14451.0 47 15513.0 48 16100.5 49 16688.0 50 16343.0 51 15998.0 52 15079.0 53 14160.0 54 13245.5 55 12331.0 56 12065.5 57 11800.0 58 11584.5 59 11369.0 60 10977.5 61 10586.0 62 9646.5 63 8707.0 64 7706.5 65 6706.0 66 5640.0 67 4574.0 68 3828.5 69 3083.0 70 2526.0 71 1969.0 72 1707.0 73 1445.0 74 1144.5 75 677.0 76 510.0 77 381.0 78 252.0 79 199.0 80 146.0 81 116.5 82 87.0 83 64.5 84 42.0 85 34.0 86 26.0 87 18.0 88 10.0 89 10.5 90 11.0 91 8.0 92 5.0 93 3.0 94 1.0 95 1.0 96 1.0 97 1.5 98 2.0 99 1.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 219919.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 45.555803581597274 #Duplication Level Percentage of deduplicated Percentage of total 1 66.136 30.128786256725178 2 11.111 10.123410671902548 3 6.375 8.712547434980479 4 4.444 8.097999644664732 5 3.024 6.888037501537508 6 2.335 6.382368081781778 7 1.6660000000000001 5.312717813685874 8 1.355 4.938249108245145 9 1.016 4.165622679501255 >10 2.521 14.454856476440817 >50 0.013 0.4300467858102783 >100 0.004 0.3653575447244102 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 396 0.18006629713667305 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.027737485164992564 0.0 2 0.0 0.0 0.0 0.17915687139355854 0.0 3 0.0 0.0 0.0 0.2628240397600935 0.0 4 0.0 0.0 0.0 0.39059835666768217 0.0 5 0.0 0.0 0.0 0.7620987727299596 0.0 6 0.0 0.0 0.0 1.037200060022099 0.0 7 0.0 0.0 0.0 1.281380872048345 0.0 8 0.0 0.0 0.0 1.7479162782660889 0.0 9 0.0 0.0 0.0 1.9616313278979989 0.0 10 0.0 0.0 0.0 2.4404439816477885 0.0 11 0.0 0.0 0.0 3.0747684374701594 0.0 12 0.0 0.0 0.0 3.508109804064224 0.0 13 0.0 0.0 0.0 3.713185309136546 0.0 14 0.0 0.0 0.0 3.7909412101728366 0.0 15 0.0 0.0 0.0 3.936449329071158 0.0 16 0.0 0.0 0.0 4.275210418381313 0.0 17 0.0 0.0 0.0 4.655805091874735 0.0 18 0.0 0.0 0.0 5.065501389147823 0.0 19 0.0 0.0 0.0 5.322414161577671 0.0 20 0.0 0.0 0.0 5.582509924108422 0.0 21 4.5471287155725515E-4 0.0 0.0 5.895352379739813 0.0 22 4.5471287155725515E-4 0.0 0.0 6.233204043306854 0.0 23 4.5471287155725515E-4 0.0 0.0 6.557414320727177 0.0 24 4.5471287155725515E-4 0.0 0.0 6.802504558496538 0.0 25 4.5471287155725515E-4 0.0 0.0 7.050323073495242 0.0 26 4.5471287155725515E-4 0.0 0.0 7.265402261741823 0.0 27 4.5471287155725515E-4 0.0 0.0 7.491849271777336 0.0 28 4.5471287155725515E-4 0.0 0.0 7.740577212519155 0.0 29 4.5471287155725515E-4 0.0 0.0 7.972935489884912 0.0 30 4.5471287155725515E-4 0.0 0.0 8.274410123727373 0.0 31 4.5471287155725515E-4 0.0 0.0 8.525411628826976 0.0 32 4.5471287155725515E-4 0.0 0.0 8.792782797302642 0.0 33 4.5471287155725515E-4 0.0 0.0 9.06333695587921 0.0 34 4.5471287155725515E-4 0.0 0.0 9.328889272868647 0.0 35 4.5471287155725515E-4 0.0 0.0 9.615358381949719 0.0 36 4.5471287155725515E-4 0.0 0.0 9.877727708838254 0.0 37 4.5471287155725515E-4 0.0 0.0 10.128274501066302 0.0 38 4.5471287155725515E-4 0.0 0.0 10.420654877477617 0.0 39 4.5471287155725515E-4 0.0 0.0 10.734406758852122 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AGGTACC 20 7.020836E-4 45.0 7 CAACGAC 25 3.880488E-5 45.0 12 CGCGCAA 25 3.880488E-5 45.0 18 GCGCAAT 25 3.880488E-5 45.0 19 GTATGCG 20 7.020836E-4 45.0 1 CGCAATC 25 3.880488E-5 45.0 20 ACGACGC 25 3.880488E-5 45.0 14 CGAAGTC 20 7.020836E-4 45.0 26 GCGATTG 60 0.0 44.999996 9 ACGGGGC 60 3.6379788E-12 41.249996 5 TTAGCGG 55 6.002665E-11 40.909092 2 ACGGGAT 40 3.441237E-7 39.375 5 AACACGT 35 6.225273E-6 38.571426 41 CGTGGAA 30 1.1369223E-4 37.499996 25 CGACGCG 30 1.1369223E-4 37.499996 15 CACGACC 30 1.1369223E-4 37.499996 27 CGTTCAT 30 1.1369223E-4 37.499996 17 CATACGA 30 1.1369223E-4 37.499996 18 GCGATGC 30 1.1369223E-4 37.499996 9 GCTAGCG 30 1.1369223E-4 37.499996 1 >>END_MODULE