SRR3551400_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551400_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	254377
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	889	0.34948128171965237	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGAATA	20	7.022918E-4	45.000004	1
TTGACGG	20	7.022918E-4	45.000004	2
TTACGCG	20	7.022918E-4	45.000004	1
AGTACGG	35	1.2069358E-7	45.000004	2
CACAACG	55	1.8189894E-12	45.0	12
ACAACGA	60	3.6379788E-12	41.249996	13
ACGAGCG	60	3.6379788E-12	41.249996	16
GCGATGC	55	6.002665E-11	40.909092	9
AGGCGAT	90	0.0	40.0	7
CACGACC	40	3.4440745E-7	39.375004	27
CGTTTTT	410	0.0	38.963413	1
GCGATTG	35	6.22912E-6	38.57143	9
TACGAAT	65	9.094947E-12	38.07692	12
TGCGACG	30	1.13742426E-4	37.499996	1
CGAATAT	60	1.546141E-10	37.499996	14
GCGATTC	30	1.13742426E-4	37.499996	9
TGGGCCG	30	1.13742426E-4	37.499996	6
ATGGGCG	55	2.732122E-9	36.81818	5
CGATGCG	55	2.732122E-9	36.81818	10
CGATTGG	25	0.0021040316	36.0	10