SRR3551399_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551399_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	132317
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCCTTCTTGCTCGTATGCCG	1229	0.928830006726271	No Hit
GAATCTGTCTCTTATACACATCTGACGCCTTCTTGCTCGTATGCCGTCTTC	1117	0.8441847986275385	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTTCTTGCTCGTATGC	902	0.6816962295094358	No Hit
GCTGTCTCTTATACACATCTGACGCCTTCTTGCTCGTATGCCGTCTTCTGC	329	0.248645298790027	Illumina Single End Adapter 1 (95% over 21bp)
GAATGACTGTCTCTTATACACATCTGACGCCTTCTTGCTCGTATGCCGTCT	301	0.2274839967653438	No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCCTTCTTGCTCGTATGCCG	257	0.19423052215512746	No Hit
GAATCTATCTCTTATACACATCTGACGCCTTCTTGCTCGTATGCCGTCTTC	247	0.18667291428916918	No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCCTTCTTGCTCGTATGC	197	0.14888487495937786	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	196	0.14812911417278202	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCTTCTTGCTCGTATGCCGTC	184	0.1390599847336321	No Hit
CCTGTCTCTTATACACATCTGACGCCTTCTTGCTCGTATGCCGTCTTCTGC	183	0.1383042239470363	Illumina Single End Adapter 1 (95% over 21bp)
GAACTGTCTCTTATACACATCTGACGCCTTCTTGCTCGTATGCCGTCTTCT	167	0.12621205136150304	TruSeq Adapter, Index 27 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCTCTT	50	2.1827873E-11	45.0	7
TCGCAAG	20	7.010651E-4	45.0	2
GTCTATG	20	7.010651E-4	45.0	16
GTTAGGC	20	7.010651E-4	45.0	17
TGAAACG	20	7.010651E-4	45.0	4
TGTTCGG	20	7.010651E-4	45.0	2
ACCAGTC	20	7.010651E-4	45.0	12
TGTTATC	25	3.8720544E-5	45.0	24
ACTAAGG	20	7.010651E-4	45.0	3
TTACGGG	20	7.010651E-4	45.0	3
GGCGATC	25	3.8720544E-5	45.0	8
TGGGACC	20	7.010651E-4	45.0	6
AGTACGG	20	7.010651E-4	45.0	2
GTTATCT	25	3.8720544E-5	45.0	25
TTGGGCG	20	7.010651E-4	45.0	5
CTATCTC	55	6.002665E-11	40.909092	5
TATCTCT	55	6.002665E-11	40.909092	6
TTATGGG	70	0.0	38.571426	3
GTCTAAT	35	6.2064755E-6	38.571426	19
AACTTAA	255	0.0	37.941177	45