SRR3551396_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551396_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	100429
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCG	254	0.25291499467285344	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGC	170	0.16927381533222474	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	144	0.1433848788696492	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	137	0.1364147805912635	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTTC	128	0.12745322566191042	No Hit
GCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTTCTGC	115	0.11450875743062262	TruSeq Adapter, Index 14 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTTCTGC	107	0.10654293082675323	TruSeq Adapter, Index 14 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGCACCG	20	7.002533E-4	45.000004	8
GCACCGA	20	7.002533E-4	45.000004	9
AGCGACT	20	7.002533E-4	45.000004	19
TTCATGC	20	7.002533E-4	45.000004	15
TGAGCGG	20	7.002533E-4	45.000004	2
TGTCGCA	20	7.002533E-4	45.000004	39
TCGCAGT	25	3.8653372E-5	45.0	41
CGAACGG	25	3.8653372E-5	45.0	2
CACGGGC	25	3.8653372E-5	45.0	4
GGCCGGT	25	3.8653372E-5	45.0	9
GGCCGAT	25	3.8653372E-5	45.0	8
CACGCCG	25	3.8653372E-5	45.0	26
GGGCCGA	25	3.8653372E-5	45.0	7
TAGTGGT	25	3.8653372E-5	45.0	15
CGCCGGT	25	3.8653372E-5	45.0	28
TGTACGG	25	3.8653372E-5	45.0	2
AGGCGAT	60	0.0	44.999996	7
TGCACGG	30	2.1456963E-6	44.999996	2
TTGGGAC	30	2.1456963E-6	44.999996	5
TTGCGGG	55	6.002665E-11	40.909092	3