SRR3551394_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551394_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	157780
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	244	0.15464570921536316	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	243	0.15401191532513628	No Hit
GAGGAGCTGAGAACCCCAGTCTAATAATGTCCATCGACACCTCCTTATCCC	179	0.11344910635061478	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTCACGG	20	7.014773E-4	45.0	2
TAAACGG	20	7.014773E-4	45.0	2
TCGGGAT	20	7.014773E-4	45.0	5
CACTCGG	20	7.014773E-4	45.0	42
GTTCGTC	20	7.014773E-4	45.0	21
CTAGGCA	20	7.014773E-4	45.0	28
GTCGGGA	20	7.014773E-4	45.0	4
TGGGTAT	30	2.1535689E-6	44.999996	6
CGAATAT	65	0.0	41.53846	14
AAGCTAC	65	0.0	41.53846	8
CTCGTAA	55	6.002665E-11	40.909092	33
GCTCGTA	55	6.002665E-11	40.909092	32
CGAATAG	50	1.0695658E-9	40.5	26
AACGAAT	50	1.0695658E-9	40.5	24
TTACGGG	50	1.0695658E-9	40.5	3
CGGGAGT	45	1.9103027E-8	40.000004	6
TCACGGG	35	6.2140807E-6	38.57143	3
CGATTTG	35	6.2140807E-6	38.57143	10
TACGAAT	70	0.0	38.57143	12
GCGATTT	35	6.2140807E-6	38.57143	9