##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551394_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 157780 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.09890353656991 33.0 31.0 34.0 30.0 34.0 2 32.22809608315376 33.0 31.0 34.0 30.0 34.0 3 32.150703511218154 33.0 31.0 34.0 30.0 34.0 4 35.87533907973127 37.0 35.0 37.0 35.0 37.0 5 35.91786664976549 37.0 35.0 37.0 35.0 37.0 6 35.88732412219546 37.0 35.0 37.0 35.0 37.0 7 26.661439979718594 36.0 10.0 37.0 0.0 37.0 8 31.08229179870706 36.0 19.0 37.0 17.0 37.0 9 35.94378881987578 39.0 32.0 39.0 32.0 39.0 10 36.71078083407276 38.0 35.0 39.0 33.0 39.0 11 37.088205095702875 39.0 37.0 39.0 34.0 39.0 12 37.14053745721891 39.0 37.0 39.0 34.0 39.0 13 37.11552161237166 39.0 37.0 39.0 33.0 39.0 14 38.35792876156674 40.0 38.0 41.0 34.0 41.0 15 38.4402205602738 40.0 38.0 41.0 34.0 41.0 16 38.37602991507162 40.0 38.0 41.0 34.0 41.0 17 38.27880593231081 40.0 37.0 41.0 34.0 41.0 18 38.20321333502345 40.0 37.0 41.0 34.0 41.0 19 38.08591076182026 40.0 37.0 41.0 34.0 41.0 20 38.1410635061478 40.0 37.0 41.0 34.0 41.0 21 38.0684434022056 40.0 37.0 41.0 34.0 41.0 22 38.04652047154266 40.0 37.0 41.0 34.0 41.0 23 38.01234630498162 40.0 37.0 41.0 34.0 41.0 24 37.94876410191406 40.0 36.0 41.0 33.0 41.0 25 37.810894916973 40.0 36.0 41.0 33.0 41.0 26 37.67696159209025 40.0 36.0 41.0 33.0 41.0 27 37.57717708201293 40.0 36.0 41.0 33.0 41.0 28 37.54399163392065 40.0 36.0 41.0 33.0 41.0 29 37.52154265432881 40.0 36.0 41.0 33.0 41.0 30 37.45126124984155 40.0 36.0 41.0 33.0 41.0 31 37.32635314995564 40.0 36.0 41.0 32.0 41.0 32 37.16119913804031 40.0 35.0 41.0 32.0 41.0 33 37.07760172391938 39.0 35.0 41.0 31.0 41.0 34 36.923057421726455 39.0 35.0 41.0 31.0 41.0 35 36.83138547344404 39.0 35.0 41.0 31.0 41.0 36 36.68399670427177 39.0 35.0 41.0 30.0 41.0 37 36.57950944352896 39.0 35.0 41.0 30.0 41.0 38 36.454056280897454 39.0 35.0 41.0 30.0 41.0 39 36.40242109266067 39.0 35.0 41.0 30.0 41.0 40 36.237032577005955 39.0 35.0 41.0 29.0 41.0 41 36.14293319812397 39.0 35.0 40.0 29.0 41.0 42 36.06469768031436 39.0 35.0 40.0 29.0 41.0 43 35.99695145138801 39.0 35.0 40.0 29.0 41.0 44 35.81848776777792 38.0 35.0 40.0 28.0 41.0 45 35.67482570668019 38.0 35.0 40.0 28.0 41.0 46 35.564982887564966 38.0 34.0 40.0 27.0 41.0 47 35.48062492077576 38.0 34.0 40.0 27.0 41.0 48 35.38795157814679 38.0 34.0 40.0 27.0 41.0 49 35.2103371783496 38.0 34.0 40.0 26.0 41.0 50 34.99710356192166 38.0 34.0 40.0 26.0 41.0 51 32.97883762200532 35.0 31.0 39.0 20.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 2.0 8 11.0 9 11.0 10 12.0 11 12.0 12 10.0 13 9.0 14 6.0 15 9.0 16 23.0 17 42.0 18 68.0 19 124.0 20 201.0 21 279.0 22 439.0 23 650.0 24 890.0 25 1141.0 26 1533.0 27 1664.0 28 1912.0 29 2392.0 30 2874.0 31 3609.0 32 4829.0 33 6910.0 34 10833.0 35 13681.0 36 14989.0 37 24108.0 38 30863.0 39 33639.0 40 5.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.93116998352136 18.703891494485994 23.353403473190518 16.01153504880213 2 29.437824819368743 25.75991887438205 27.019901128153123 17.782355178096083 3 32.53010520978577 24.10381543921917 27.185321333502344 16.18075801749271 4 29.835847382431236 25.42907846368361 25.90379008746356 18.8312840664216 5 26.051464063886424 31.346812016732155 23.646216250475348 18.955507668906073 6 26.86398783115731 35.9519584231208 23.147420458866776 14.036633286855116 7 61.49068322981367 28.966915958930155 5.506401318291291 4.035999492964888 8 83.7064266700469 6.079984788946635 6.899480289010014 3.3141082519964504 9 76.93116998352136 8.546710609709722 8.977056661173787 5.545062745595133 10 42.91608568893396 27.468627202433773 15.823932057294968 13.791355051337305 11 33.49473951071112 26.495753580935478 22.469894790214223 17.539612118139182 12 31.009633667131446 23.812270249714793 26.472303206997083 18.705792876156675 13 24.77753834453036 25.95639498035239 27.849537330460134 21.416529344657118 14 21.386741031816452 27.931296742299406 27.85460768158195 22.827354544302192 15 20.825199645075422 26.128786918494107 32.91418430726328 20.131829129167194 16 24.45050069717328 24.82063632906579 30.38217771580682 20.346685257954114 17 23.407275953859806 25.700342248700725 27.39067055393586 23.50171124350361 18 24.927113702623906 26.109773101787297 27.164406135124857 21.798707060463936 19 26.758144251489412 27.021802509823807 24.799087336798074 21.420965901888707 20 28.259601977436937 25.08429458740018 26.925465838509314 19.73063759665357 21 26.807580174927114 26.824058816073016 25.546964127265813 20.82139688173406 22 25.601470401825328 26.005197109899857 25.79731271390544 22.596019774369374 23 25.507668906071746 26.562301939409306 26.270756749904933 21.65927240461402 24 24.110153378121435 24.582963620230704 28.913677272151094 22.393205729496767 25 23.843326150335912 26.780327037647357 27.09405501330967 22.28229179870706 26 22.97692990239574 28.628470021548992 26.16047661300545 22.234123463049816 27 23.216503992901508 28.26150335910762 26.382304474584867 22.139688173406007 28 21.635822030675627 28.65382177715807 28.249461275193305 21.460894916973 29 22.853340093801496 27.2525034858664 27.68475091900114 22.209405501330966 30 23.43516288502979 26.472303206997083 27.36975535555837 22.722778552414756 31 25.340347319051844 27.126378501711244 25.089998732412223 22.443275446824693 32 25.736468500443653 26.945747242996575 26.353783749524656 20.964000507035113 33 24.646976803143616 27.8203828115097 25.46076815819496 22.071872227151733 34 23.558752693624033 27.4458106223856 28.038407909747747 20.957028774242616 35 23.691849410571685 26.531246038788186 27.403980225630626 22.372924325009507 36 24.454937254404868 29.524020788439596 24.98985929775637 21.031182659399164 37 24.288249461275193 29.325009506908355 26.55913296995817 19.827608061858285 38 22.514894156420333 28.60438585372037 26.614906832298136 22.265813157561162 39 23.746989479021423 27.497781721384207 26.952085181898845 21.803143617695525 40 24.510077322854606 26.55469641272658 27.393839523386994 21.54138674103182 41 21.152237292432503 27.473063759665354 28.208898466218784 23.16580048168336 42 23.54100646469768 26.730257320319435 26.396247940169857 23.33248827481303 43 24.09684370642667 26.61300545062746 26.092026872860945 23.19812397008493 44 23.864875142603626 27.012295601470406 26.351882367853975 22.770946888072 45 22.69108885790341 27.454049942958548 25.627455951324627 24.22740524781341 46 21.91025478514387 29.019520851818985 26.017239193814174 23.05298516922297 47 22.72404614019521 27.139688173406007 27.879325643300803 22.256940043097984 48 23.063759665356827 25.796045126124984 28.753961211813916 22.38623399670427 49 21.955887945240207 27.152364051210547 27.75636962859678 23.135378374952463 50 20.29027760172392 27.90721257447078 28.584738243123336 23.217771580681962 51 21.083153758397767 27.177715806819624 27.057928761566743 24.68120167321587 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 39.0 1 177.0 2 315.0 3 484.0 4 653.0 5 491.0 6 329.0 7 283.5 8 238.0 9 256.0 10 274.0 11 286.5 12 299.0 13 312.0 14 325.0 15 338.5 16 352.0 17 358.0 18 364.0 19 435.5 20 507.0 21 533.5 22 560.0 23 616.5 24 673.0 25 849.0 26 1323.0 27 1621.0 28 2075.5 29 2530.0 30 2972.0 31 3414.0 32 3860.0 33 4306.0 34 4647.5 35 4989.0 36 5096.5 37 5204.0 38 5827.5 39 6451.0 40 7189.5 41 7928.0 42 8458.5 43 8989.0 44 9618.0 45 10247.0 46 10623.0 47 10999.0 48 11188.0 49 11377.0 50 11491.5 51 11606.0 52 10845.0 53 10084.0 54 9628.5 55 9173.0 56 8818.5 57 8464.0 58 8212.5 59 7961.0 60 7725.5 61 7490.0 62 6947.0 63 6404.0 64 5325.5 65 4247.0 66 3596.0 67 2945.0 68 2460.5 69 1976.0 70 1590.5 71 1205.0 72 1043.5 73 882.0 74 720.5 75 455.0 76 351.0 77 272.0 78 193.0 79 154.5 80 116.0 81 79.0 82 42.0 83 37.5 84 33.0 85 25.5 86 18.0 87 15.0 88 12.0 89 8.5 90 5.0 91 3.0 92 1.0 93 3.0 94 5.0 95 2.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 157780.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 44.80415768791989 #Duplication Level Percentage of deduplicated Percentage of total 1 64.4104000452668 28.858537203701356 2 11.712782210151078 10.495626822157435 3 6.986646296610649 9.39092407149195 4 4.77989022803146 8.566358220306757 5 3.281842358399819 7.352009126632019 6 2.288802127539184 6.152871086322728 7 1.7880382504385222 5.607808340727596 8 1.338199513381995 4.796552161237166 9 0.9647484863916709 3.8902268982127017 >10 2.4231879137667627 13.704525288376221 >50 0.01838963390482657 0.6249207757637216 >100 0.007072936117240989 0.5596400050703512 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 244 0.15464570921536316 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 243 0.15401191532513628 No Hit GAGGAGCTGAGAACCCCAGTCTAATAATGTCCATCGACACCTCCTTATCCC 179 0.11344910635061478 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.031055900621118012 0.0 2 0.0 0.0 0.0 0.19203954873875015 0.0 3 0.0 0.0 0.0 0.2478134110787172 0.0 4 0.0 0.0 0.0 0.34478387628343266 0.0 5 0.0 0.0 0.0 0.653441500823932 0.0 6 0.0 0.0 0.0 0.8822410951958423 0.0 7 0.0 0.0 0.0 1.0742806439345924 0.0 8 0.0 0.0 0.0 1.4608949169730003 0.0 9 0.0 0.0 0.0 1.6231461528710862 0.0 10 0.0 0.0 0.0 2.0579287615667385 0.0 11 0.0 0.0 0.0 2.4616554696412725 0.0 12 0.0 0.0 0.0 2.8476359487894536 0.0 13 0.0 0.0 0.0 2.976296108505514 0.0 14 0.0 0.0 0.0 3.034605146406389 0.0 15 0.0 0.0 0.0 3.144251489415642 0.0 16 0.0 0.0 0.0 3.3648117632146026 0.0 17 0.0 0.0 0.0 3.6462162504753453 0.0 18 0.0 0.0 0.0 3.94156420332108 0.0 19 0.0 0.0 0.0 4.117125110913931 0.0 20 0.0 0.0 0.0 4.288249461275194 0.0 21 0.0 0.0 0.0 4.501204208391431 0.0 22 0.0 0.0 0.0 4.754087970591963 0.0 23 0.0 0.0 0.0 4.978451007732286 0.0 24 0.0 0.0 0.0 5.162251235898086 0.0 25 0.0 0.0 0.0 5.337812143490937 0.0 26 0.0 0.0 0.0 5.506401318291291 0.0 27 0.0 0.0 0.0 5.669286348079605 0.0 28 0.0 0.0 0.0 5.8549879579160855 0.0 29 0.0 0.0 0.0 6.030548865508936 0.0 30 0.0 0.0 0.0 6.249841551527443 0.0 31 0.0 0.0 0.0 6.457725947521866 0.0 32 0.0 0.0 0.0 6.659906198504246 0.0 33 0.0 0.0 0.0 6.867790594498669 0.0 34 0.0 0.0 0.0 7.075041196602864 0.0 35 0.0 0.0 0.0 7.2943338826213715 0.0 36 0.0 0.0 0.0 7.510457599188744 0.0 37 0.0 0.0 0.0 7.733553048548612 0.0 38 0.0 0.0 0.0 7.974394726834833 0.0 39 0.0 0.0 0.0 8.25072886297376 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTCACGG 20 7.014773E-4 45.0 2 TAAACGG 20 7.014773E-4 45.0 2 TCGGGAT 20 7.014773E-4 45.0 5 CACTCGG 20 7.014773E-4 45.0 42 GTTCGTC 20 7.014773E-4 45.0 21 CTAGGCA 20 7.014773E-4 45.0 28 GTCGGGA 20 7.014773E-4 45.0 4 TGGGTAT 30 2.1535689E-6 44.999996 6 CGAATAT 65 0.0 41.53846 14 AAGCTAC 65 0.0 41.53846 8 CTCGTAA 55 6.002665E-11 40.909092 33 GCTCGTA 55 6.002665E-11 40.909092 32 CGAATAG 50 1.0695658E-9 40.5 26 AACGAAT 50 1.0695658E-9 40.5 24 TTACGGG 50 1.0695658E-9 40.5 3 CGGGAGT 45 1.9103027E-8 40.000004 6 TCACGGG 35 6.2140807E-6 38.57143 3 CGATTTG 35 6.2140807E-6 38.57143 10 TACGAAT 70 0.0 38.57143 12 GCGATTT 35 6.2140807E-6 38.57143 9 >>END_MODULE