SRR3551390_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551390_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	64652
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	180	0.2784136608302914	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGC	159	0.2459320670667574	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCG	146	0.22582441378456972	No Hit
GAATCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTCTTC	124	0.1917960774608674	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	93	0.14384705809565057	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	88	0.13611334529480915	No Hit
GCAGGAGACTCAGCCCGAGGAAATCGCAGATAAGTTTTTAATTAAAAAGAT	65	0.10053826641093858	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTCATA	20	6.983944E-4	45.000004	38
CGACAAT	20	6.983944E-4	45.000004	20
GCGGGAT	20	6.983944E-4	45.000004	5
AACGCGG	20	6.983944E-4	45.000004	2
ACCGGCG	20	6.983944E-4	45.000004	20
ACTCGCC	20	6.983944E-4	45.000004	36
GTCATAC	20	6.983944E-4	45.000004	39
TCGACAA	20	6.983944E-4	45.000004	19
GAAATAG	20	6.983944E-4	45.000004	34
TGCCGGC	20	6.983944E-4	45.000004	27
CACGCCA	20	6.983944E-4	45.000004	27
CACCGGC	20	6.983944E-4	45.000004	19
AGTGGGA	20	6.983944E-4	45.000004	4
AGGCGTC	20	6.983944E-4	45.000004	35
ACACCGG	20	6.983944E-4	45.000004	18
ATGAAAC	20	6.983944E-4	45.000004	3
AGGCGAT	20	6.983944E-4	45.000004	7
AGAACTT	20	6.983944E-4	45.000004	39
TGGGGTC	20	6.983944E-4	45.000004	6
CGGCGCA	20	6.983944E-4	45.000004	22