##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551390_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 64652 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.976876198725485 33.0 31.0 34.0 30.0 34.0 2 32.119068242281756 33.0 31.0 34.0 30.0 34.0 3 31.970457217100787 33.0 31.0 34.0 30.0 34.0 4 35.74588566478995 37.0 35.0 37.0 35.0 37.0 5 35.82178432221741 37.0 35.0 37.0 35.0 37.0 6 35.790462785374004 37.0 35.0 37.0 35.0 37.0 7 26.7610437418796 35.0 10.0 37.0 0.0 37.0 8 31.127637196065088 35.0 19.0 37.0 17.0 37.0 9 35.94977726907133 39.0 32.0 39.0 32.0 39.0 10 36.727324754067936 38.0 35.0 39.0 33.0 39.0 11 37.05497123058838 39.0 37.0 39.0 34.0 39.0 12 36.913521623460994 39.0 35.0 39.0 33.0 39.0 13 36.66678525026295 39.0 35.0 39.0 33.0 39.0 14 37.81685021345047 40.0 36.0 41.0 33.0 41.0 15 37.981299882447566 40.0 36.0 41.0 33.0 41.0 16 37.98793540803069 40.0 36.0 41.0 33.0 41.0 17 37.93172678339417 40.0 36.0 41.0 33.0 41.0 18 37.83358596795149 40.0 36.0 41.0 33.0 41.0 19 37.71176452391264 39.0 36.0 41.0 33.0 41.0 20 37.72970673761059 39.0 35.0 41.0 33.0 41.0 21 37.65631380313061 39.0 35.0 41.0 33.0 41.0 22 37.64944626616346 39.0 35.0 41.0 33.0 41.0 23 37.622950566107775 39.0 35.0 41.0 33.0 41.0 24 37.53070283981934 39.0 35.0 41.0 33.0 41.0 25 37.446358968013364 39.0 35.0 41.0 33.0 41.0 26 37.29703644125472 39.0 35.0 41.0 33.0 41.0 27 37.177999133824166 39.0 35.0 41.0 32.0 41.0 28 37.19038854173112 39.0 35.0 41.0 32.0 41.0 29 37.15456598403762 39.0 35.0 41.0 32.0 41.0 30 37.07730619315721 39.0 35.0 41.0 32.0 41.0 31 36.91537771453319 39.0 35.0 41.0 32.0 41.0 32 36.70969188888201 39.0 35.0 41.0 31.0 41.0 33 36.578357978098126 39.0 35.0 41.0 31.0 41.0 34 36.439584235599824 39.0 35.0 41.0 30.0 41.0 35 36.33785497741756 39.0 35.0 41.0 30.0 41.0 36 36.173946668316525 38.0 35.0 40.0 30.0 41.0 37 36.02869207449112 38.0 35.0 40.0 29.0 41.0 38 35.9191362989544 38.0 35.0 40.0 29.0 41.0 39 35.891526944255396 38.0 35.0 40.0 29.0 41.0 40 35.677349501948896 38.0 35.0 40.0 28.0 41.0 41 35.62061498484192 38.0 35.0 40.0 28.0 41.0 42 35.577166986326795 38.0 35.0 40.0 28.0 41.0 43 35.51692136360824 38.0 35.0 40.0 28.0 41.0 44 35.34756852069542 38.0 34.0 40.0 27.0 41.0 45 35.21159438223102 38.0 34.0 40.0 26.0 41.0 46 35.095464950813586 38.0 34.0 40.0 26.0 41.0 47 34.945338117923654 37.0 34.0 40.0 26.0 41.0 48 34.87854977417559 37.0 34.0 40.0 26.0 41.0 49 34.7150745529914 37.0 34.0 40.0 25.0 41.0 50 34.465569510610656 37.0 34.0 40.0 24.0 41.0 51 32.40137969436367 35.0 30.0 39.0 18.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 2.0 10 10.0 11 6.0 12 3.0 13 3.0 14 2.0 15 5.0 16 5.0 17 9.0 18 18.0 19 47.0 20 99.0 21 133.0 22 206.0 23 288.0 24 428.0 25 595.0 26 721.0 27 908.0 28 946.0 29 1133.0 30 1324.0 31 1707.0 32 2235.0 33 3132.0 34 5324.0 35 6956.0 36 5827.0 37 9020.0 38 11417.0 39 12141.0 40 2.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.69640537029017 20.04578357978098 24.69374497308668 16.56406607684217 2 30.229536595928973 26.22502010765328 26.574583926251314 16.97085937016643 3 31.46847738662377 25.312441997153996 27.556765451958178 15.66231516426406 4 30.769349749427704 24.636515498360453 26.670481964981747 17.923652787230093 5 25.689847181835056 30.062488399430798 25.03093485120337 19.21672956753078 6 26.18944502876941 36.79855224896368 23.982243395409267 13.029759326857636 7 60.445152508816435 28.54668069046588 7.009837282682669 3.998329518035018 8 82.11192229165377 6.09880591474355 8.070902678958113 3.7183691146445583 9 75.02320113840253 8.899956691208315 10.053826641093856 6.0230155292953045 10 45.65829363360762 25.907937882818782 16.341335148177937 12.092433335395656 11 39.5826888572666 22.93355193961517 21.55385757594506 15.929901627173173 12 37.37084699622595 21.332673389840995 24.72158633916971 16.574893274763348 13 25.18560910722019 29.12052218028831 26.266782156777822 19.427086555713664 14 17.442615851017756 33.886036008166805 27.41601187898286 21.255336261832582 15 17.363731980449174 24.781909299016274 40.50145393800656 17.352904782527993 16 19.337375487223905 22.74484934727464 39.08773123801274 18.83004392748871 17 19.55855967332797 22.48035636948586 29.607746086741322 28.353337870444843 18 22.44787477572233 25.97908804058652 29.25044855534245 22.322588628348697 19 27.49798923467178 26.965909793973893 25.788838705685823 19.747262265668503 20 31.301429190125596 24.00853801893213 26.23584730557446 18.454185485367816 21 24.294685392563263 27.21029511848048 26.57613066881148 21.918888820144776 22 22.024067314236216 26.8143290230774 26.178617830848232 24.982985831838146 23 23.77343314978655 28.08575140753573 25.462476025490314 22.678339417187406 24 23.965229227247416 24.526696776588505 30.19241477448493 21.31565922167914 25 21.70853183196189 26.320918146383715 28.13988739714162 23.830662624512776 26 21.11148920373693 30.74614861102518 26.99684464517726 21.14551754006063 27 22.183381797933553 29.278289921425475 28.05017632865186 20.48815195198911 28 20.384520200457835 28.15690156530347 31.54272102951185 19.915857204726844 29 22.064282620800594 26.276062612138833 30.571366701726166 21.088288065334407 30 22.141619748809006 27.866113963991836 27.66967765885046 22.322588628348697 31 25.753263626801953 27.153065643754253 24.175586215430304 22.918084514013486 32 26.204912454371094 29.95266967765885 24.46018684650127 19.382231021468787 33 25.573841489822435 30.59147435500835 23.66670791313494 20.167976242034275 34 23.190311204603105 28.920992390026605 26.232753820454125 21.655942584916165 35 22.497370537647715 26.025490317391576 26.582317639052157 24.894821505908556 36 24.3952236589742 28.453876136855783 26.42454989791499 20.726350306255025 37 22.910350801212644 29.38501515807709 27.863020478871498 19.841613561838766 38 22.472622656685022 29.368000989915238 24.464827074181773 23.694549279217966 39 22.746396089834807 27.378890057538825 27.62482212460558 22.24989172802079 40 24.35964858009033 26.324011631504053 28.01460124976799 21.30173853863763 41 18.551630266658417 28.39974014724989 28.760131163769103 24.288498422322586 42 23.19649817484378 27.295365959289736 25.696034152075732 23.812101713790756 43 24.372022520571676 27.33712800841428 25.502691332054695 22.788158138959353 44 22.314854915547855 29.34170636639238 26.59623832209367 21.747200395966097 45 21.239868836230897 28.933366330507948 25.309348512033658 24.517416321227493 46 22.341149539070717 30.357916228422944 24.608674132277425 22.692260100228918 47 21.821444038854175 28.269813772195757 27.87694116191301 22.03180102703706 48 23.705376477139144 24.83140506094166 27.648023263008103 23.815195198911095 49 20.565489079997526 26.370413908309096 28.198663614428014 24.86543339726536 50 18.771267710202313 28.325496504361812 28.808080183134322 24.095155602301553 51 20.39844088349935 28.80189321289365 24.58392625131473 26.215739652292275 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 20.0 1 99.0 2 178.0 3 294.0 4 410.0 5 307.5 6 205.0 7 180.0 8 155.0 9 169.5 10 184.0 11 190.5 12 197.0 13 185.5 14 174.0 15 170.5 16 167.0 17 157.0 18 147.0 19 178.0 20 209.0 21 219.5 22 230.0 23 275.0 24 320.0 25 429.5 26 581.0 27 623.0 28 790.5 29 958.0 30 1114.0 31 1270.0 32 1388.5 33 1507.0 34 1706.5 35 1906.0 36 1830.5 37 1755.0 38 2062.5 39 2370.0 40 2906.0 41 3442.0 42 4012.5 43 4583.0 44 4868.5 45 5154.0 46 5362.0 47 5570.0 48 5107.0 49 4644.0 50 4649.0 51 4654.0 52 4269.5 53 3885.0 54 3615.0 55 3345.0 56 3195.5 57 3046.0 58 3098.5 59 3151.0 60 3083.5 61 3016.0 62 2773.0 63 2530.0 64 2073.5 65 1617.0 66 1275.5 67 934.0 68 777.5 69 621.0 70 488.0 71 355.0 72 302.5 73 250.0 74 192.5 75 117.0 76 99.0 77 69.5 78 40.0 79 32.0 80 24.0 81 16.0 82 8.0 83 11.0 84 14.0 85 10.5 86 7.0 87 3.5 88 0.0 89 0.5 90 1.0 91 0.5 92 0.0 93 1.0 94 2.0 95 1.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 64652.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 49.73396027965106 #Duplication Level Percentage of deduplicated Percentage of total 1 68.59177707283696 34.113407164511536 2 11.441811283199602 11.380931757718244 3 6.31336692168937 9.419662191424859 4 3.8595509112396593 7.678030068675369 5 2.8798905268395845 7.161418053579162 6 2.06506188965603 6.16222235971045 7 1.4057349007899482 4.893893460372455 8 1.1413820986502459 4.541236156654087 9 0.765068109721963 3.424488028212584 >10 1.5052559557131306 9.62692569448741 >50 0.01866019779809666 0.655818845511353 >100 0.012440131865397773 0.9419662191424859 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 180 0.2784136608302914 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGC 159 0.2459320670667574 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCG 146 0.22582441378456972 No Hit GAATCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTCTTC 124 0.1917960774608674 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 93 0.14384705809565057 No Hit AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 88 0.13611334529480915 No Hit GCAGGAGACTCAGCCCGAGGAAATCGCAGATAAGTTTTTAATTAAAAAGAT 65 0.10053826641093858 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.027841366083029142 0.0 2 0.0 0.0 0.0 0.3124419971539937 0.0 3 0.0 0.0 0.0 0.4624760254903174 0.0 4 0.0 0.0 0.0 0.6635525583121945 0.0 5 0.0 0.0 0.0 1.4168161851141496 0.0 6 0.0 0.0 0.0 1.78648765699437 0.0 7 0.0 0.0 0.0 2.170079811916105 0.0 8 0.0 0.0 0.0 2.941904349440079 0.0 9 0.0 0.0 0.0 3.2419724061127266 0.0 10 0.0 0.0 0.0 4.199406050856895 0.0 11 0.0 0.0 0.0 5.094969993194333 0.0 12 0.0 0.0 0.0 6.058590608179174 0.0 13 0.0 0.0 0.0 6.347831466930644 0.0 14 0.0 0.0 0.0 6.482398069665285 0.0 15 0.0 0.0 0.0 6.700488770649013 0.0 16 0.0 0.0 0.0 7.124296232135124 0.0 17 0.0 0.0 0.0 7.5852255150652725 0.0 18 0.0 0.0 0.0 8.142052836725856 0.0 19 0.0 0.0 0.0 8.423559982676483 0.0 20 0.0 0.0 0.0 8.709707356307616 0.0 21 0.0 0.0 0.0 9.122687619872549 0.0 22 0.0 0.0 0.0 9.504733032234116 0.0 23 0.0 0.0 0.0 9.903792612757533 0.0 24 0.0 0.0 0.0 10.228608550392872 0.0 25 0.0 0.0 0.0 10.514755924024005 0.0 26 0.0 0.0 0.0 10.765328218771268 0.0 27 0.0 0.0 0.0 11.023634226319372 0.0 28 0.0 0.0 0.0 11.308234857390335 0.0 29 0.0 0.0 0.0 11.591288745901132 0.0 30 0.0 0.0 0.0 11.934665594258492 0.0 31 0.0 0.0 0.0 12.299696838458207 0.0 32 0.0 0.0 0.0 12.647713914496071 0.0 33 0.0015467425601682855 0.0 0.0 12.926127575326362 0.0 34 0.0015467425601682855 0.0 0.0 13.210728206397327 0.0 35 0.0015467425601682855 0.0 0.0 13.609787786920744 0.0 36 0.0015467425601682855 0.0 0.0 13.967085318319619 0.0 37 0.0015467425601682855 0.0 0.0 14.339850275320176 0.0 38 0.0015467425601682855 0.0 0.0 14.647652044793665 0.0 39 0.0015467425601682855 0.0 0.0 14.989482150590856 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTCATA 20 6.983944E-4 45.000004 38 CGACAAT 20 6.983944E-4 45.000004 20 GCGGGAT 20 6.983944E-4 45.000004 5 AACGCGG 20 6.983944E-4 45.000004 2 ACCGGCG 20 6.983944E-4 45.000004 20 ACTCGCC 20 6.983944E-4 45.000004 36 GTCATAC 20 6.983944E-4 45.000004 39 TCGACAA 20 6.983944E-4 45.000004 19 GAAATAG 20 6.983944E-4 45.000004 34 TGCCGGC 20 6.983944E-4 45.000004 27 CACGCCA 20 6.983944E-4 45.000004 27 CACCGGC 20 6.983944E-4 45.000004 19 AGTGGGA 20 6.983944E-4 45.000004 4 AGGCGTC 20 6.983944E-4 45.000004 35 ACACCGG 20 6.983944E-4 45.000004 18 ATGAAAC 20 6.983944E-4 45.000004 3 AGGCGAT 20 6.983944E-4 45.000004 7 AGAACTT 20 6.983944E-4 45.000004 39 TGGGGTC 20 6.983944E-4 45.000004 6 CGGCGCA 20 6.983944E-4 45.000004 22 >>END_MODULE