SRR3551383_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551383_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	461345
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCAAACACCGTCGTATGCCGTCTTCTGC	2340	0.5072126066176073	No Hit
CCTGTCTCTTATACACATCTGACGCAAACACCGTCGTATGCCGTCTTCTGC	2022	0.4382837139234196	No Hit
CTGTCTCTTATACACATCTGACGCAAACACCGTCGTATGCCGTCTTCTGCT	1641	0.3556990972049117	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1224	0.26531120961536375	No Hit
TCTGTCTCTTATACACATCTGACGCAAACACCGTCGTATGCCGTCTTCTGC	903	0.19573204434858946	No Hit
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	796	0.17253898925966465	No Hit
GCACAAGAGTGAGGAGAGCTAAAAGGACATGTAAGAAACCAATCAAGATCA	712	0.15433135722723773	No Hit
ACTGTCTCTTATACACATCTGACGCAAACACCGTCGTATGCCGTCTTCTGC	654	0.14175942082389537	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAAACACCGTCGTATGCC	572	0.12398530383985955	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	552	0.11965015335594836	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	544	0.11791609316238388	No Hit
GGTCTTGGGGGATGGACGTGCCAATCAATGGAACAGAATTGAAACTTCAGA	490	0.10621118685582374	No Hit
GCTAAAGGTGTAATTTGAAATGGCCTTCGGGTAAATGCAAGATACTTAACT	464	0.1005754912267392	No Hit
CGCTGTCTCTTATACACATCTGACGCAAACACCGTCGTATGCCGTCTTCTG	462	0.10014197617834808	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGTTGA	30	2.1626656E-6	45.000004	15
TACGAAG	30	2.1626656E-6	45.000004	1
ACAACGA	35	1.2098099E-7	45.0	13
GTACCGT	20	7.0288905E-4	45.0	44
CGACGGT	25	3.887163E-5	45.0	28
CTATCGA	20	7.0288905E-4	45.0	1
TTAGCAC	20	7.0288905E-4	45.0	28
TAGGTCG	20	7.0288905E-4	45.0	1
CGTGAGA	55	1.8189894E-12	45.0	2
CGTTGAA	20	7.0288905E-4	45.0	16
CAACCGG	20	7.0288905E-4	45.0	2
CGACCGC	20	7.0288905E-4	45.0	25
CACGACG	25	3.887163E-5	45.0	26
TACGGGT	25	3.887163E-5	45.0	4
GCCGCAC	20	7.0288905E-4	45.0	27
CTAACGG	20	7.0288905E-4	45.0	2
ATATCAC	55	1.8189894E-12	45.0	30
TCGTGCG	20	7.0288905E-4	45.0	45
TTCCAAT	20	7.0288905E-4	45.0	15
CTACGGA	20	7.0288905E-4	45.0	11