SRR3551374_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551374_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1184464
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCG	11676	0.9857623363816882	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGC	11037	0.9318138837482608	No Hit
GAATCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTC	9931	0.8384383147145038	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9193	0.7761316511097003	No Hit
GCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTCTGC	3102	0.26189061043645057	Illumina Single End Adapter 1 (95% over 21bp)
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCAGCAAGAT	2482	0.20954625889853976	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCT	2175	0.1836273622499291	No Hit
GAACTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTCT	1937	0.16353388536924718	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCAGCAAGATCGTA	1777	0.15002566561752828	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTC	1707	0.14411581947615124	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1631	0.13769941509408476	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1550	0.13086087884477707	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1439	0.12148955139202205	No Hit
GCTAAAGGTGTAATTTGAAATGGCCTTCGGGTAAATGCAAGATACTTAACT	1212	0.10232476461927081	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGATTC	20	7.033373E-4	45.000004	26
TGCGCAA	20	7.033373E-4	45.000004	29
CGATCGA	290	0.0	45.000004	41
CCGCGTA	30	2.1655596E-6	44.999996	40
ACGATCG	195	0.0	43.846153	40
CCGATCG	125	0.0	43.199997	40
CGGCGAA	540	0.0	42.916668	31
CGATGAA	3360	0.0	42.656246	19
CCGATGA	3265	0.0	42.243492	18
GGCGAAC	520	0.0	41.971157	32
GATGAAT	3665	0.0	41.930424	20
TACGGCT	1410	0.0	41.648937	7
TCGAATG	635	0.0	41.102364	44
CGAATGC	610	0.0	40.942623	45
ATCGAAT	705	0.0	40.851067	43
CGTTTTT	3600	0.0	40.8125	1
TGAATGA	3830	0.0	40.65274	22
ACGGGAC	340	0.0	40.367645	5
ACCGATG	3440	0.0	40.356102	17
ACGGCTG	1465	0.0	40.085323	8