SRR3551373_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551373_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	692328
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3821	0.5519060329785882	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTC	3306	0.4775193260997677	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCG	3181	0.4594643001583065	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGC	2665	0.38493315307195436	No Hit
GCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTCTGC	2640	0.3813221478836621	No Hit
CCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTCTGC	1516	0.21897135461804232	No Hit
CTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTCTGCT	1329	0.19196103580961627	Illumina Single End Adapter 2 (95% over 21bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCC	1170	0.1689950428120775	No Hit
GAATGCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTT	830	0.11988537225130286	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	816	0.1178632093458592	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCT	758	0.10948567730902116	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	749	0.10818571544123595	No Hit
TCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTCTGC	745	0.10760795461110918	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCCCTAG	25	3.8891914E-5	45.000004	42
CGACGGT	55	1.8189894E-12	45.000004	28
CACGACC	25	3.8891914E-5	45.000004	27
TACGGAT	35	1.2109922E-7	45.000004	18
ACGGGCG	50	2.1827873E-11	45.000004	5
CGTTATC	25	3.8891914E-5	45.000004	31
ATCCCGC	25	3.8891914E-5	45.000004	11
CATCGGC	25	3.8891914E-5	45.000004	15
CGGTCTA	55	1.8189894E-12	45.000004	31
CGCACTA	35	1.2109922E-7	45.000004	11
GTAACGG	60	0.0	45.000004	2
TCGCACG	20	7.03134E-4	45.0	1
CGTCGTC	20	7.03134E-4	45.0	16
GACGAAC	20	7.03134E-4	45.0	20
CGTTTCA	20	7.03134E-4	45.0	29
TCGAACG	20	7.03134E-4	45.0	1
TAACGGG	180	0.0	42.5	3
CGGGTAT	80	0.0	42.1875	6
CTACGGG	120	0.0	41.250004	3
CGTTTTT	2005	0.0	40.174564	1