SRR3551371_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551371_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	511285
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCG	9127	1.7851100658145653	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGC	8379	1.6388120128695345	No Hit
GAATCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTC	8050	1.5744643398495948	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4042	0.790557125673548	No Hit
GCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTCTGC	3816	0.7463547727783917	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCT	2112	0.4130768553742042	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGCTGAGGTT	1863	0.36437603293662046	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTA	1557	0.3045268294591079	No Hit
GAACTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTCT	1490	0.2914225920963846	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTC	1372	0.26834348748740916	No Hit
CCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTCTGC	1342	0.2624759185190256	No Hit
CTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTCTGCT	1222	0.2390056426454913	Illumina Single End Adapter 1 (95% over 21bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCC	999	0.1953900466471733	No Hit
GAATGCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTT	849	0.16605220180525537	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	845	0.16526985927613758	No Hit
TCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTCTGC	762	0.149036251796943	No Hit
AGCTACCATTACATTTATTATTTTACTTCTACTCACAATTCTAGAATTTGC	747	0.1461024673127512	No Hit
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	556	0.10874561154737573	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	530	0.10366038510810996	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	515	0.10072660062391817	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTCGTAC	20	7.029607E-4	45.000004	33
CGATTGC	20	7.029607E-4	45.000004	10
CGCGACC	20	7.029607E-4	45.000004	10
AGACGTG	20	7.029607E-4	45.000004	24
CCCGTTA	20	7.029607E-4	45.000004	26
CGGATTA	20	7.029607E-4	45.000004	22
CGTAGTG	20	7.029607E-4	45.000004	16
TTCCACG	20	7.029607E-4	45.000004	17
GTATGCG	35	1.2101555E-7	45.000004	1
CCGAGAG	20	7.029607E-4	45.000004	34
AAATTCG	20	7.029607E-4	45.000004	30
ACTCGTT	20	7.029607E-4	45.000004	31
CGTACAT	20	7.029607E-4	45.000004	35
ATGCGTT	20	7.029607E-4	45.000004	27
AACTCGC	20	7.029607E-4	45.000004	39
TGGGCGC	20	7.029607E-4	45.000004	6
GGACCGT	20	7.029607E-4	45.000004	8
CCAACGA	35	1.2101555E-7	45.000004	37
ATCGGCT	20	7.029607E-4	45.000004	29
CGCAAAG	20	7.029607E-4	45.000004	24

Summary

Basic Statistics

Per base sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content