SRR3551368_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551368_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	732624
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3131	0.42736792679464497	No Hit
GCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTTCTGC	2178	0.29728755814715324	No Hit
CTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTTCTGCT	1017	0.13881609120094346	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	946	0.12912489899320798	No Hit
CCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTTCTGC	940	0.12830592500382187	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCC	859	0.11724977614710956	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	859	0.11724977614710956	No Hit
AGCTACCATTACATTTATTATTTTACTTCTACTCACAATTCTAGAATTTGC	825	0.11260892354058834	No Hit
GAGGAGCTGAGAACCCCAGTCTAATAATGTCCATCGACACCTCCTTATCCC	777	0.10605713162549957	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTGATCG	20	7.031609E-4	45.000004	10
TCGCAAG	20	7.031609E-4	45.000004	2
ACGCATC	20	7.031609E-4	45.000004	25
GCGCGTA	20	7.031609E-4	45.000004	1
ATAGCGG	40	6.8084773E-9	45.000004	2
TTAAGCG	20	7.031609E-4	45.000004	1
CGTCGAC	20	7.031609E-4	45.000004	31
ATCGGTT	20	7.031609E-4	45.000004	24
AATAGCG	20	7.031609E-4	45.000004	1
CCACGTA	20	7.031609E-4	45.000004	27
TGCGTAG	40	6.8084773E-9	45.000004	1
GTCGACT	25	3.889416E-5	45.0	32
CCCACCG	25	3.889416E-5	45.0	36
GCCGATA	25	3.889416E-5	45.0	9
TCTACGG	45	3.8380676E-10	45.0	2
CGGATTA	25	3.889416E-5	45.0	6
TGCGACG	30	2.164421E-6	44.999996	1
ACTAACG	30	2.164421E-6	44.999996	1
CTACCGA	30	2.164421E-6	44.999996	25
AATCGAA	30	2.164421E-6	44.999996	29