##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551368_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 732624 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.641767127476033 31.0 31.0 34.0 30.0 34.0 2 31.777767313110136 33.0 31.0 34.0 30.0 34.0 3 31.73502233069078 33.0 31.0 34.0 30.0 34.0 4 35.43995009718491 37.0 35.0 37.0 33.0 37.0 5 33.34783736268536 37.0 35.0 37.0 30.0 37.0 6 34.29634983292931 37.0 35.0 37.0 30.0 37.0 7 35.41588318155016 37.0 35.0 37.0 32.0 37.0 8 35.33788546375767 37.0 35.0 37.0 33.0 37.0 9 37.225516772587305 39.0 37.0 39.0 34.0 39.0 10 36.70032240276049 39.0 35.0 39.0 32.0 39.0 11 36.801381063137434 39.0 37.0 39.0 33.0 39.0 12 36.79764927165913 39.0 35.0 39.0 33.0 39.0 13 36.88438271200506 39.0 37.0 39.0 33.0 39.0 14 37.900023750245694 40.0 37.0 41.0 33.0 41.0 15 38.04824029788814 40.0 37.0 41.0 33.0 41.0 16 38.08374418528467 40.0 37.0 41.0 33.0 41.0 17 37.991998624123696 40.0 37.0 41.0 33.0 41.0 18 37.950644532529644 40.0 37.0 41.0 33.0 41.0 19 37.86777937932691 40.0 37.0 41.0 33.0 41.0 20 38.04502173010985 40.0 37.0 41.0 34.0 41.0 21 37.89797495031558 40.0 36.0 41.0 33.0 41.0 22 38.02650199829653 40.0 37.0 41.0 34.0 41.0 23 38.1265969992793 40.0 37.0 41.0 34.0 41.0 24 37.98416786782852 40.0 36.0 41.0 34.0 41.0 25 37.63946035073926 39.0 36.0 41.0 33.0 41.0 26 37.7656710672869 40.0 36.0 41.0 33.0 41.0 27 37.3942800126668 40.0 36.0 41.0 33.0 41.0 28 37.435504433379194 40.0 36.0 41.0 33.0 41.0 29 37.635235809910675 40.0 36.0 41.0 33.0 41.0 30 37.387534396907554 39.0 36.0 41.0 33.0 41.0 31 37.34756164144227 39.0 35.0 41.0 33.0 41.0 32 37.48503871017056 40.0 36.0 41.0 33.0 41.0 33 37.49080838192579 40.0 36.0 41.0 33.0 41.0 34 37.38149719364913 40.0 36.0 41.0 33.0 41.0 35 37.36824209963092 40.0 36.0 41.0 33.0 41.0 36 37.16520889296556 40.0 35.0 41.0 32.0 41.0 37 37.16278745987027 40.0 35.0 41.0 32.0 41.0 38 37.0048073773177 39.0 35.0 41.0 32.0 41.0 39 36.949061182816834 39.0 35.0 41.0 32.0 41.0 40 36.83708832907467 39.0 35.0 41.0 31.0 41.0 41 36.657842221931034 39.0 35.0 41.0 31.0 41.0 42 36.83779128174889 39.0 35.0 41.0 31.0 41.0 43 36.75274629277774 39.0 35.0 41.0 31.0 41.0 44 36.79875898141475 39.0 35.0 41.0 31.0 41.0 45 36.80464330952849 39.0 35.0 41.0 32.0 41.0 46 36.69070355325515 39.0 35.0 41.0 31.0 41.0 47 36.675948371879706 39.0 35.0 41.0 31.0 41.0 48 36.60680922273909 39.0 35.0 41.0 31.0 41.0 49 36.53849723732774 39.0 35.0 41.0 31.0 41.0 50 36.4577081831881 39.0 35.0 41.0 31.0 41.0 51 35.58377694424425 38.0 34.0 40.0 28.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 8.0 8 11.0 9 47.0 10 44.0 11 57.0 12 37.0 13 50.0 14 57.0 15 67.0 16 105.0 17 155.0 18 229.0 19 386.0 20 647.0 21 1027.0 22 1574.0 23 2208.0 24 3130.0 25 4583.0 26 6000.0 27 7260.0 28 7909.0 29 8927.0 30 10816.0 31 13804.0 32 18590.0 33 26534.0 34 47635.0 35 57764.0 36 60713.0 37 89257.0 38 151203.0 39 211729.0 40 61.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.08748280154622 21.391054620105265 23.62275874118238 12.898703837166131 2 33.59636047959117 24.14799405970866 24.27998536766472 17.975660093035444 3 32.23194981327393 23.099161370634867 27.668763240079496 17.00012557601171 4 29.6831662626395 25.025524689335864 26.110938216602243 19.180370831422394 5 24.455518792723144 34.294535805542814 23.28411299657123 17.965832405162814 6 27.061767018279497 33.89583196837668 24.264697853196182 14.777703160147635 7 78.4572986961934 7.006458974862959 9.658160256830243 4.87808207211339 8 79.69313044617704 6.5325460263382045 9.010215335560941 4.764108191923825 9 72.00760553844809 9.860037345213916 11.617692022101378 6.514665094236608 10 39.96920657799908 28.677739195003166 18.698541134333574 12.654513092664176 11 31.170832514359343 26.32619188014589 24.500835353469174 18.002140252025594 12 29.67907139269257 22.672202930834917 28.21952324794165 19.42920242853087 13 25.42190810019874 24.98457598986656 28.603076066304133 20.990439843630565 14 19.230328244774945 29.11384284435126 28.817374260193496 22.838454650680294 15 19.396033981960734 27.381712856799666 33.688631549062 19.533621612177598 16 20.85940400532879 26.666066085741118 32.257065015615105 20.217464893314986 17 22.03517766275743 26.007474502609796 28.31602568302431 23.641322151608467 18 22.66374019961126 27.535133984144665 28.918381052217786 20.882744764026295 19 25.238457926576253 27.16413876695276 27.365879359671535 20.23152394679945 20 26.717251960077746 26.191470658891873 28.309200899779423 18.782076481250957 21 25.724109502282204 26.377377754482517 28.00085719277556 19.897655550459717 22 23.0325514861648 26.03845901854157 27.645422481381992 23.28356701391164 23 22.76392801764616 26.744551093057282 28.611265806197995 21.88025508309856 24 22.856199087116995 25.27148987748149 29.75318853873201 22.119122496669505 25 22.463501059206358 27.615120443774703 26.780722444255172 23.140656052763763 26 21.311341151805017 29.431058769573475 26.776081591648648 22.481518486972853 27 21.56699753215838 30.411916617528227 27.749978160693615 20.27110768961978 28 20.774776693092228 28.42003537967634 29.012153574002493 21.79303435322894 29 21.087897748367514 27.48190067483457 29.210891262093515 22.219310314704405 30 21.751676166764945 27.890295704208434 28.080707156740704 22.27732097228592 31 21.84558518421455 28.30114765555046 25.91656838978794 23.93669877044705 32 22.45640328463168 28.337455502413246 26.709335211513686 22.496806001441392 33 22.634530127323156 28.49838389132761 26.723940247657733 22.143145733691497 34 21.050224944855753 26.8201696914106 27.516161086723883 24.613444277009762 35 21.72983686038131 26.296845312192886 26.74072921444015 25.23258861298565 36 21.351607372949836 28.59161043045273 25.980311865295157 24.07647033130228 37 21.106188167463802 28.16492498198257 27.538000393107513 23.190886457446112 38 20.82009325383826 26.925407849046714 27.68446024154273 24.570038655572297 39 22.84623490357946 24.850537246937037 29.010106139029023 23.293121710454475 40 22.860839939723515 25.03193998558606 28.991269737273146 23.115950337417285 41 20.005896612723582 26.204301251392252 28.091763305597418 25.69803883028675 42 21.824564851820305 26.723257769333248 26.936463997903427 24.515713380943023 43 22.857564043765972 27.22556181615672 27.35263928017646 22.56423485990085 44 21.29004782808098 26.65637489353338 27.451325645897484 24.602251632488155 45 20.92410295049029 26.21044355631265 26.764069973137655 26.1013835200594 46 20.051213173469613 27.733598680905896 27.467295638690516 24.74789250693398 47 20.98716394767302 25.93021795627771 29.305755749197402 23.776862346851864 48 20.7881532682522 25.079849963965145 29.46804909476075 24.663947673021905 49 21.15887549411431 25.205016488676318 29.349297866299768 24.286810150909606 50 19.17163510886894 25.304931315381424 30.100706501561508 25.422727074188124 51 19.84496822380921 25.537519928367075 27.627541549280394 26.98997029854332 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 506.0 1 951.5 2 1397.0 3 3714.5 4 6032.0 5 4276.5 6 2521.0 7 2404.5 8 2288.0 9 2243.0 10 2198.0 11 2116.0 12 2034.0 13 2073.0 14 2112.0 15 2115.0 16 2118.0 17 2043.0 18 1968.0 19 2129.0 20 2290.0 21 2428.0 22 2566.0 23 3045.5 24 3525.0 25 4235.5 26 6316.0 27 7686.0 28 9079.0 29 10472.0 30 11935.0 31 13398.0 32 15310.5 33 17223.0 34 19594.5 35 21966.0 36 23969.0 37 25972.0 38 27385.5 39 28799.0 40 31377.0 41 33955.0 42 37011.0 43 40067.0 44 42897.5 45 45728.0 46 47747.0 47 49766.0 48 52839.5 49 55913.0 50 59329.0 51 62745.0 52 60657.5 53 58570.0 54 52103.5 55 45637.0 56 41487.5 57 37338.0 58 36106.5 59 34875.0 60 33678.0 61 32481.0 62 28859.5 63 25238.0 64 21390.0 65 17542.0 66 14431.0 67 11320.0 68 9365.0 69 7410.0 70 6190.0 71 4970.0 72 4099.0 73 3228.0 74 2483.5 75 1373.0 76 1007.0 77 827.0 78 647.0 79 450.0 80 253.0 81 177.0 82 101.0 83 83.0 84 65.0 85 35.5 86 6.0 87 3.0 88 0.0 89 1.0 90 2.0 91 1.5 92 1.0 93 1.5 94 2.0 95 1.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 732624.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 26.93954061206343 #Duplication Level Percentage of deduplicated Percentage of total 1 74.5010610565099 20.070243599736653 2 10.459756059993937 5.635620463409664 3 3.8693135614206673 3.127125894860995 4 1.9324765736797482 2.0824012455402703 5 1.0974876649960286 1.4782906761199586 6 0.7152422404814669 1.1560978430948228 7 0.5229359651852135 0.986135827013095 8 0.37305044986229924 0.8039846195531152 9 0.2917621658677359 0.707394484481171 >10 4.726355450500494 33.74279386978487 >50 1.43121736257576 24.79368365814054 >100 0.07166324419189976 3.2870795250141263 >500 0.006142563787877122 1.2568042451222363 >1k 0.0015356409469692806 0.8723440481285129 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3131 0.42736792679464497 No Hit GCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTTCTGC 2178 0.29728755814715324 No Hit CTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTTCTGCT 1017 0.13881609120094346 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 946 0.12912489899320798 No Hit CCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTTCTGC 940 0.12830592500382187 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCC 859 0.11724977614710956 No Hit AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 859 0.11724977614710956 No Hit AGCTACCATTACATTTATTATTTTACTTCTACTCACAATTCTAGAATTTGC 825 0.11260892354058834 No Hit GAGGAGCTGAGAACCCCAGTCTAATAATGTCCATCGACACCTCCTTATCCC 777 0.10605713162549957 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.3649566489768285E-4 0.0 0.0 0.14523138745113456 0.0 2 1.3649566489768285E-4 0.0 0.0 0.756595470527856 0.0 3 1.3649566489768285E-4 0.0 0.0 1.0006497193649129 0.0 4 1.3649566489768285E-4 0.0 0.0 1.3227794885234445 0.0 5 1.3649566489768285E-4 0.0 0.0 2.2101378060232806 0.0 6 1.3649566489768285E-4 0.0 0.0 2.7482037170499467 0.0 7 1.3649566489768285E-4 0.0 0.0 3.2387691366922184 0.0 8 1.3649566489768285E-4 0.0 0.0 4.010106139029024 0.0 9 2.729913297953657E-4 0.0 0.0 4.304390792548428 0.0 10 2.729913297953657E-4 0.0 0.0 5.055526436480378 0.0 11 2.729913297953657E-4 0.0 0.0 6.129474327895346 0.0 12 2.729913297953657E-4 0.0 0.0 7.013147262442945 0.0 13 2.729913297953657E-4 0.0 0.0 7.456758173360414 0.0 14 2.729913297953657E-4 0.0 0.0 7.675151237196706 0.0 15 2.729913297953657E-4 0.0 0.0 7.958243246194501 0.0 16 2.729913297953657E-4 0.0 0.0 8.501495992487278 0.0 17 2.729913297953657E-4 0.0 0.0 9.122960754766428 0.0 18 2.729913297953657E-4 0.0 0.0 9.850209657341283 0.0 19 2.729913297953657E-4 0.0 0.0 10.25915066937474 0.0 20 2.729913297953657E-4 0.0 0.0 10.71927755574483 0.0 21 2.729913297953657E-4 0.0 0.0 11.219261176265041 0.0 22 2.729913297953657E-4 0.0 0.0 11.771932123435759 0.0 23 2.729913297953657E-4 0.0 0.0 12.307131625499574 0.0 24 2.729913297953657E-4 0.0 0.0 12.727538273384438 0.0 25 2.729913297953657E-4 0.0 0.0 13.094984603289 0.0 26 2.729913297953657E-4 0.0 0.0 13.431992399921379 0.0 27 2.729913297953657E-4 0.0 0.0 13.778145406101903 0.0 28 2.729913297953657E-4 0.0 0.0 14.142452335713818 0.0 29 2.729913297953657E-4 0.0 0.0 14.525868658411408 0.0 30 4.0948699469304855E-4 0.0 0.0 14.959105898796654 0.0 31 4.0948699469304855E-4 0.0 0.0 15.365180501867261 0.0 32 5.459826595907314E-4 0.0 0.0 15.784222193103147 0.0 33 5.459826595907314E-4 0.0 0.0 16.157128349603617 0.0 34 5.459826595907314E-4 0.0 0.0 16.559654065386884 0.0 35 5.459826595907314E-4 0.0 0.0 16.947165258031404 0.0 36 5.459826595907314E-4 0.0 0.0 17.348189521500796 0.0 37 5.459826595907314E-4 0.0 0.0 17.743071480049792 0.0 38 5.459826595907314E-4 0.0 0.0 18.120754984821684 0.0 39 6.824783244884143E-4 0.0 0.0 18.51085959509926 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTGATCG 20 7.031609E-4 45.000004 10 TCGCAAG 20 7.031609E-4 45.000004 2 ACGCATC 20 7.031609E-4 45.000004 25 GCGCGTA 20 7.031609E-4 45.000004 1 ATAGCGG 40 6.8084773E-9 45.000004 2 TTAAGCG 20 7.031609E-4 45.000004 1 CGTCGAC 20 7.031609E-4 45.000004 31 ATCGGTT 20 7.031609E-4 45.000004 24 AATAGCG 20 7.031609E-4 45.000004 1 CCACGTA 20 7.031609E-4 45.000004 27 TGCGTAG 40 6.8084773E-9 45.000004 1 GTCGACT 25 3.889416E-5 45.0 32 CCCACCG 25 3.889416E-5 45.0 36 GCCGATA 25 3.889416E-5 45.0 9 TCTACGG 45 3.8380676E-10 45.0 2 CGGATTA 25 3.889416E-5 45.0 6 TGCGACG 30 2.164421E-6 44.999996 1 ACTAACG 30 2.164421E-6 44.999996 1 CTACCGA 30 2.164421E-6 44.999996 25 AATCGAA 30 2.164421E-6 44.999996 29 >>END_MODULE