SRR3551365_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551365_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1083211
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	23051	2.128024918506182	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGGACTGGTCGTATGCCGTCTTC	1968	0.1816820545581609	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGGACTGGTCGTATGCC	1731	0.15980266079277258	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCTGGACTGGTCGTATGCCGTCTT	1397	0.1289684096634912	No Hit
GCTGTCTCTTATACACATCTGACGCTGGACTGGTCGTATGCCGTCTTCTGC	1230	0.11355128409885054	No Hit
CGTTCTGTCTCTTATACACATCTGACGCTGGACTGGTCGTATGCCGTCTTC	1111	0.10256542815757966	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACACGAT	20	7.0331054E-4	45.000004	2
TGCGTCG	20	7.0331054E-4	45.000004	2
CAATGCG	30	2.1653868E-6	44.999996	1
CGTTTTT	10300	0.0	43.82039	1
CGTTATT	690	0.0	42.06522	1
ACACGAC	50	1.0822987E-9	40.500004	26
TATTGCG	45	1.9281288E-8	40.000004	1
TATAGCG	45	1.9281288E-8	40.000004	1
CGAATGG	130	0.0	39.80769	2
CGTAAGG	165	0.0	39.545452	2
TACGTTG	40	3.4579716E-7	39.375004	1
CGAATAT	120	0.0	39.374996	14
GCTACGA	120	0.0	39.374996	10
CCGAATT	35	6.2479576E-6	38.571426	29
AATGCGG	125	0.0	37.8	2
CGGCATG	30	1.1398787E-4	37.499996	1
GCCGATT	60	1.5643309E-10	37.499996	9
TGCTACG	85	0.0	37.058823	1
AAGGGCG	310	0.0	37.01613	5
GCGCGAC	55	2.748493E-9	36.818184	9