SRR3551360_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551360_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	640532
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCG	5796	0.9048728244646637	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGC	4999	0.7804450050895193	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTC	4860	0.758744293805774	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4107	0.6411857643333979	No Hit
GCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTGC	1887	0.2945988646937234	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGCAAGCGT	1457	0.22746716791666927	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCT	1127	0.17594749364590684	No Hit
GAATGATACGGCGACCACCGATGAATGATACGGCGAGCAACCGTCGAATGC	1046	0.1633017554158106	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTA	851	0.13285831152854188	No Hit
GAACTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCT	848	0.13238995085335317	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	750	0.11709016879718732	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTC	659	0.10288322831646195	No Hit
CTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTGCT	650	0.1014781462908957	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCGACG	30	2.1639898E-6	45.000004	1
TCGTTGC	20	7.030946E-4	45.0	38
CGACGTA	20	7.030946E-4	45.0	45
CGTTGCA	20	7.030946E-4	45.0	39
CCCGTCG	50	2.1827873E-11	45.0	40
CGCTCAC	20	7.030946E-4	45.0	34
GACGGGT	75	0.0	45.0	4
TTAGTCG	20	7.030946E-4	45.0	1
CGTGTAA	25	3.8888647E-5	45.0	26
ATGCGCC	20	7.030946E-4	45.0	22
TGTCGTG	20	7.030946E-4	45.0	1
AGGTGCG	25	3.8888647E-5	45.0	1
TCGGTCG	20	7.030946E-4	45.0	1
ATACCGA	25	3.8888647E-5	45.0	20
TACCGTG	20	7.030946E-4	45.0	32
CCGATGA	1575	0.0	43.714283	18
AACCGTC	220	0.0	42.954544	39
GCAACCG	195	0.0	42.692307	37
GTCGAAT	260	0.0	42.40385	43
ACCCGTC	75	0.0	42.0	39