SRR3551357_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551357_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	895592
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5156	0.575708581586258	No Hit
CCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTGC	1601	0.1787644373777345	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCC	1556	0.17373982795737344	No Hit
GCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTGC	1495	0.16692869074310623	No Hit
CTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTGCT	1060	0.11835746634628268	No Hit
TCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTGC	923	0.10306032211096124	No Hit
GAATCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTC	900	0.10049218840722114	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGACATA	20	7.03245E-4	45.000004	24
TTAAGCG	80	0.0	45.000004	1
CTACGCG	20	7.03245E-4	45.000004	1
TCGACGT	20	7.03245E-4	45.000004	25
TACACCG	20	7.03245E-4	45.000004	18
ACGGTTG	20	7.03245E-4	45.000004	1
ACGAACC	20	7.03245E-4	45.000004	10
CCCGTCG	25	3.8901133E-5	45.0	32
TACGCCC	35	1.2115197E-7	45.0	38
TACGGGT	30	2.164963E-6	44.999996	4
GCTACGA	100	0.0	42.75	10
CGTTTTT	2425	0.0	42.402058	1
CGTAAGG	170	0.0	41.02941	2
TATAGCG	55	6.002665E-11	40.909092	1
TACGTAG	55	6.002665E-11	40.909092	1
GTTAGCG	45	1.9274012E-8	40.000004	1
GCCGATT	40	3.4570803E-7	39.375004	9
TATTACG	40	3.4570803E-7	39.375004	1
CAATACG	40	3.4570803E-7	39.375004	35
TAGTACG	40	3.4570803E-7	39.375004	1