SRR3551356_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551356_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	800635
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCG	3286	0.41042422577079446	No Hit
GAATCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTC	2958	0.3694567437096804	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGC	2497	0.3118774472762245	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2413	0.3013857750410612	No Hit
GCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTGC	1614	0.201589987947067	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	888	0.11091196362886957	No Hit
CCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTGC	842	0.10516652407151825	No Hit
CTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTGCT	811	0.1012945974133032	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTATCGG	30	2.1646738E-6	45.000004	2
CGATCGA	30	2.1646738E-6	45.000004	41
CTCGTAG	25	3.889741E-5	45.0	1
CCGATCG	35	1.2113014E-7	45.0	40
CGTTGCG	20	7.0320023E-4	45.0	41
TCGTGCA	20	7.0320023E-4	45.0	36
TATAGCG	20	7.0320023E-4	45.0	1
TTACGAG	25	3.889741E-5	45.0	1
CCGCCTA	20	7.0320023E-4	45.0	27
CGATATT	20	7.0320023E-4	45.0	10
CGATAGA	35	1.2113014E-7	45.0	10
CGAATAT	125	0.0	41.399998	14
TGTTACG	60	3.6379788E-12	41.250004	1
CCACGCT	60	3.6379788E-12	41.250004	12
AACACGT	50	1.0804797E-9	40.5	41
GTACGAG	45	1.9270374E-8	40.0	1
CTACGAA	130	0.0	39.80769	11
GCTACGA	130	0.0	39.80769	10
TCGTTGA	40	3.4564619E-7	39.375	24
CTATCGT	40	3.4564619E-7	39.375	32