SRR3551354_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551354_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	964400
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3046	0.31584404811281624	No Hit
GCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCTGC	2549	0.26430941518042306	No Hit
CCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCTGC	2244	0.23268353380340107	No Hit
CTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCTGCT	1720	0.1783492326835338	Illumina Single End Adapter 1 (95% over 21bp)
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1174	0.12173372044794692	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCC	1117	0.11582330982994608	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1084	0.11240149315636665	No Hit
TCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCTGC	966	0.10016590626296142	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGATTGT	25	3.8903367E-5	45.000004	10
TAGGCCG	30	2.1651376E-6	45.000004	1
CGCATCC	20	7.0327224E-4	45.0	41
CCGGACA	20	7.0327224E-4	45.0	30
CGACACT	20	7.0327224E-4	45.0	14
CGAGATT	20	7.0327224E-4	45.0	16
AACTCGT	20	7.0327224E-4	45.0	12
ACCCGGT	20	7.0327224E-4	45.0	12
CGGTATT	20	7.0327224E-4	45.0	43
GATTCGC	20	7.0327224E-4	45.0	38
CTTACCG	20	7.0327224E-4	45.0	33
TGTTACG	85	0.0	42.35294	1
CGCACGG	45	1.927765E-8	40.0	2
TAATGCG	45	1.927765E-8	40.0	1
AATCGGC	45	1.927765E-8	40.0	20
CTAACGG	120	0.0	39.375004	2
ACGGGTC	105	0.0	38.57143	5
GCGATAT	35	6.2472445E-6	38.571426	9
CGTTTTT	1885	0.0	38.554375	1
CGAATAT	165	0.0	38.181816	14