SRR3551353_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551353_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	656912
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3411	0.5192476313417931	No Hit
GCTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCGTCTTCTGC	1435	0.2184463063545802	Illumina Single End Adapter 1 (95% over 21bp)
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1361	0.20718147940667853	No Hit
CAAGGAAGGTGAAATAATCTATATCTTTTATTTTGTTTTGGTTTAATATAA	1207	0.18373846116374798	No Hit
CTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCGTCTTCTGCT	931	0.1417237011958984	Illumina Single End Adapter 1 (95% over 22bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCC	910	0.13852692598095329	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	881	0.13411233163650535	No Hit
CCTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCGTCTTCTGC	793	0.1207163212119736	Illumina Single End Adapter 1 (95% over 21bp)
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	698	0.10625471904912683	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTTCGAA	20	7.0310757E-4	45.000004	24
TAACCGT	20	7.0310757E-4	45.000004	26
CGTAGCG	20	7.0310757E-4	45.000004	42
CCACGCG	20	7.0310757E-4	45.000004	14
ATCGCTA	20	7.0310757E-4	45.000004	19
ACGACAC	20	7.0310757E-4	45.000004	28
TCGCAAC	25	3.888975E-5	45.0	15
TGACCGC	25	3.888975E-5	45.0	31
TCCGTCC	25	3.888975E-5	45.0	35
TTAATCG	30	2.1640772E-6	44.999996	20
TAATCGT	30	2.1640772E-6	44.999996	21
TGCAACG	50	1.0804797E-9	40.5	1
CGTTAGG	95	0.0	40.26316	2
CGTTTTT	1835	0.0	40.095367	1
ATAGCGG	90	0.0	40.000004	2
ACTACGG	45	1.9261279E-8	40.000004	2
GGTATAC	40	3.4552068E-7	39.375004	18
CGTTATT	105	0.0	38.57143	1
CGTTGAT	35	6.244203E-6	38.571426	25
CGCGACC	70	0.0	38.571426	10