SRR3551351_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551351_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	544720
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCCG	7005	1.2859817888089293	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGC	5674	1.0416360699074754	No Hit
GAATCTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCCGTCTTC	5522	1.0137318255250403	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3216	0.5903950653546777	No Hit
GCTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCCGTCTTCTGC	3164	0.5808488764870025	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCCGTCT	1428	0.26215303275077106	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCTTCTACGT	1410	0.2588485827581143	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCCGTC	999	0.18339697459245116	No Hit
CCTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCCGTCTTCTGC	995	0.18266265237186077	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCTTCTACGTCGTA	988	0.18137758848582758	No Hit
GAACTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCCGTCTTCT	982	0.180276105154942	No Hit
CTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCCGTCTTCTGCT	938	0.17219856072844764	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCC	908	0.1666911440740197	No Hit
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	766	0.14062270524306067	No Hit
AGCTACCATTACATTTATTATTTTACTTCTACTCACAATTCTAGAATTTGC	720	0.13217799970627112	No Hit
GCTAAAGGTGTAATTTGAAATGGCCTTCGGGTAAATGCAAGATACTTAACT	685	0.12575268027610514	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	652	0.11969452195623441	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	631	0.11583933029813483	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	612	0.11235129975033045	No Hit
TCTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCCGTCTTCTGC	581	0.10666030254075488	No Hit
GAATGCTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCCGTCTT	551	0.10115288588632691	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTACGG	30	2.1633914E-6	45.000004	2
TCTATTG	30	2.1633914E-6	45.000004	18
AGACTTA	35	1.2103555E-7	45.0	20
CGGGTAT	40	6.8030204E-9	45.0	6
AATTTCG	20	7.0300145E-4	45.0	39
ATTAGCG	20	7.0300145E-4	45.0	1
TTAATCG	35	1.2103555E-7	45.0	20
CGTTGAT	35	1.2103555E-7	45.0	25
ACCGAAT	20	7.0300145E-4	45.0	39
TACGGGT	25	3.888095E-5	45.0	4
CGACACG	20	7.0300145E-4	45.0	40
ACGGGTA	40	6.8030204E-9	45.0	5
TCGATAG	40	6.8030204E-9	45.0	1
CTGAACG	25	3.888095E-5	45.0	34
CCCCGTA	20	7.0300145E-4	45.0	40
TACGCCT	25	3.888095E-5	45.0	29
TACGATA	20	7.0300145E-4	45.0	1
TGTTCGT	20	7.0300145E-4	45.0	33
ACAGCGA	25	3.888095E-5	45.0	45
CGAATGT	20	7.0300145E-4	45.0	45

Summary

Basic Statistics

Per base sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content