Basic Statistics
Measure | Value |
---|---|
Filename | SRR3551350_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1168062 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 46 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 7093 | 0.6072451633560547 | No Hit |
GAATCTGTCTCTTATACACATCTGACGCGTTCTGCTTCGTATGCCGTCTTC | 4388 | 0.3756649903857843 | No Hit |
GAATGATACCTGTCTCTTATACACATCTGACGCGTTCTGCTTCGTATGCCG | 4291 | 0.36736063667853247 | No Hit |
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTTCTGCTTCGTATGC | 3378 | 0.28919697755769813 | No Hit |
CCTGTCTCTTATACACATCTGACGCGTTCTGCTTCGTATGCCGTCTTCTGC | 3186 | 0.2727594939309728 | No Hit |
GCTGTCTCTTATACACATCTGACGCGTTCTGCTTCGTATGCCGTCTTCTGC | 3023 | 0.25880475522703417 | No Hit |
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTTCTGCTTCGTATGCC | 1894 | 0.1621489270261339 | No Hit |
CTGTCTCTTATACACATCTGACGCGTTCTGCTTCGTATGCCGTCTTCTGCT | 1623 | 0.13894810378216224 | No Hit |
TCTGTCTCTTATACACATCTGACGCGTTCTGCTTCGTATGCCGTCTTCTGC | 1241 | 0.10624436031649005 | No Hit |
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT | 1202 | 0.10290549645481148 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TACGATA | 20 | 7.033333E-4 | 45.000004 | 14 |
TGTTACG | 40 | 6.8157533E-9 | 45.000004 | 1 |
AGATTCG | 20 | 7.033333E-4 | 45.000004 | 1 |
AAGTCGA | 20 | 7.033333E-4 | 45.000004 | 27 |
CTAGACG | 45 | 3.8562575E-10 | 45.0 | 1 |
CGCATCG | 35 | 1.2119563E-7 | 45.0 | 21 |
TAGTTCG | 25 | 3.8908453E-5 | 45.0 | 1 |
CCGGTCA | 25 | 3.8908453E-5 | 45.0 | 23 |
GCTCGCC | 25 | 3.8908453E-5 | 45.0 | 14 |
AGTCGAA | 25 | 3.8908453E-5 | 45.0 | 28 |
CGTAAGG | 165 | 0.0 | 43.636364 | 2 |
TACGGCT | 475 | 0.0 | 41.210526 | 7 |
CGTTTTT | 2860 | 0.0 | 41.145103 | 1 |
GCGAATG | 55 | 6.184564E-11 | 40.90909 | 1 |
TCGACGG | 55 | 6.184564E-11 | 40.90909 | 2 |
CGATATT | 45 | 1.9283107E-8 | 40.0 | 10 |
TTACGAG | 40 | 3.4582808E-7 | 39.375004 | 1 |
TGCAACG | 40 | 3.4582808E-7 | 39.375004 | 1 |
AACGCGT | 35 | 6.2483778E-6 | 38.571426 | 27 |
GATTACG | 35 | 6.2483778E-6 | 38.571426 | 1 |