SRR3551349_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551349_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	865373
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCG	3657	0.4225923387949474	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGC	3298	0.3811073375295971	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTCTTC	3292	0.3804139948900648	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3254	0.3760228248396934	No Hit
GCTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTCTTCTGC	2814	0.3251776979406568	TruSeq Adapter, Index 23 (95% over 21bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCC	1302	0.15045535277851285	No Hit
CTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTCTTCTGCT	1126	0.1301173020188982	TruSeq Adapter, Index 20 (95% over 22bp)
AGCTACCATTACATTTATTATTTTACTTCTACTCACAATTCTAGAATTTGC	1117	0.12907728805959973	No Hit
CCTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTCTTCTGC	1098	0.12688170303441407	TruSeq Adapter, Index 23 (95% over 21bp)
GAACTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTCTTCT	935	0.10804589466045277	No Hit
TCTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTCTTCTGC	907	0.10481029567596863	TruSeq Adapter, Index 23 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAGTCA	20	7.0323196E-4	45.0	35
ACCGCAC	25	3.8900038E-5	45.0	35
TAGAACG	20	7.0323196E-4	45.0	1
CGCGCAT	20	7.0323196E-4	45.0	42
ATCGTTG	45	3.8380676E-10	45.0	23
TATTCGC	25	3.8900038E-5	45.0	20
TGTTCGC	20	7.0323196E-4	45.0	28
TCGTCTC	20	7.0323196E-4	45.0	14
CTCGCGC	25	3.8900038E-5	45.0	33
TATCGTG	20	7.0323196E-4	45.0	25
GTGCGAT	20	7.0323196E-4	45.0	16
TCGCGCA	25	3.8900038E-5	45.0	34
ATGGGCG	160	0.0	42.1875	5
CGAATAT	150	0.0	42.000004	14
GCTACGA	145	0.0	41.89655	10
CGTAAGG	105	0.0	40.714287	2
AAGTACG	45	1.9274012E-8	40.0	1
CGACAGG	45	1.9274012E-8	40.0	2
CGTTTTT	1815	0.0	39.545456	1
TTAGCGG	205	0.0	39.512196	2