##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551347_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1088728 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.612422937593227 31.0 31.0 34.0 30.0 34.0 2 31.755123410071203 31.0 31.0 34.0 30.0 34.0 3 31.71730220955096 31.0 31.0 34.0 30.0 34.0 4 35.43855214525575 37.0 35.0 37.0 33.0 37.0 5 33.43640192959123 37.0 35.0 37.0 30.0 37.0 6 34.320224151486876 37.0 35.0 37.0 30.0 37.0 7 35.4040871549184 37.0 35.0 37.0 32.0 37.0 8 35.29938699105745 37.0 35.0 37.0 33.0 37.0 9 37.06854696489849 39.0 37.0 39.0 33.0 39.0 10 36.58687018245145 38.0 35.0 39.0 32.0 39.0 11 36.77046608519299 39.0 37.0 39.0 33.0 39.0 12 36.83956598893388 39.0 37.0 39.0 33.0 39.0 13 36.91625640196633 39.0 37.0 39.0 33.0 39.0 14 38.00122344607652 40.0 37.0 41.0 33.0 41.0 15 38.014514185361264 40.0 37.0 41.0 33.0 41.0 16 38.13744755347525 40.0 37.0 41.0 34.0 41.0 17 37.96361533826631 40.0 37.0 41.0 33.0 41.0 18 37.92247742319477 39.0 37.0 41.0 33.0 41.0 19 37.81912011080821 39.0 37.0 41.0 33.0 41.0 20 37.80129012939871 40.0 36.0 41.0 33.0 41.0 21 37.83333945668707 39.0 36.0 41.0 33.0 41.0 22 37.958221888295334 40.0 37.0 41.0 33.0 41.0 23 37.936434995701404 40.0 37.0 41.0 33.0 41.0 24 37.85121260774041 40.0 36.0 41.0 33.0 41.0 25 37.6830999110889 39.0 36.0 41.0 33.0 41.0 26 37.73230963105569 40.0 36.0 41.0 33.0 41.0 27 37.30372875502421 40.0 36.0 41.0 33.0 41.0 28 37.352424113277145 40.0 36.0 41.0 32.0 41.0 29 37.64297602339611 40.0 36.0 41.0 33.0 41.0 30 37.3672707967463 40.0 36.0 41.0 32.0 41.0 31 37.335762467760546 39.0 36.0 41.0 32.0 41.0 32 37.26070974568487 40.0 36.0 41.0 32.0 41.0 33 37.19708228317817 40.0 36.0 41.0 32.0 41.0 34 37.08687844897899 40.0 36.0 41.0 31.0 41.0 35 36.9923938761564 40.0 36.0 41.0 31.0 41.0 36 36.776076301886235 40.0 36.0 41.0 31.0 41.0 37 36.75529608864657 40.0 36.0 41.0 31.0 41.0 38 36.675742701574684 40.0 35.0 41.0 30.0 41.0 39 36.540293810758975 39.0 35.0 41.0 30.0 41.0 40 36.59536725426369 39.0 35.0 41.0 30.0 41.0 41 36.477529741129096 39.0 35.0 41.0 30.0 41.0 42 36.61337083275161 39.0 35.0 41.0 30.0 41.0 43 36.443087713368264 39.0 35.0 41.0 30.0 41.0 44 36.62748546928158 39.0 35.0 41.0 30.0 41.0 45 36.62984877765613 39.0 35.0 41.0 31.0 41.0 46 36.4712728982813 39.0 35.0 41.0 30.0 41.0 47 36.35813077279173 39.0 35.0 41.0 30.0 41.0 48 36.38464244512863 39.0 35.0 41.0 30.0 41.0 49 36.39748219941069 39.0 35.0 41.0 30.0 41.0 50 36.29604180291129 39.0 35.0 41.0 30.0 41.0 51 35.48352297359855 38.0 35.0 40.0 27.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 11.0 9 37.0 10 55.0 11 37.0 12 34.0 13 32.0 14 55.0 15 63.0 16 85.0 17 152.0 18 259.0 19 627.0 20 1411.0 21 2939.0 22 5272.0 23 6954.0 24 8442.0 25 10014.0 26 11354.0 27 11809.0 28 11569.0 29 12485.0 30 15113.0 31 19946.0 32 26634.0 33 37481.0 34 60666.0 35 75863.0 36 88062.0 37 129857.0 38 226761.0 39 324576.0 40 72.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.41295530196707 19.65642474520725 22.13822001454909 14.792399938276594 2 29.585626529307596 30.103386704484496 23.83037820282017 16.480608563387733 3 28.22054728086354 28.758238972452254 28.393409556840645 14.62780418984356 4 25.827387556855342 22.95366703161855 33.847021478275565 17.371923933250546 5 27.520464248186876 30.33512502663659 24.60531923492369 17.539091490252844 6 23.428533113872334 36.65598753775048 25.640012932523092 14.2754664158541 7 74.11538970247848 4.860718195913029 16.515603529990962 4.508288571617521 8 74.67181885650042 9.52423378474697 10.716634457826013 5.0873129009265865 9 69.11193613097119 6.781951047460891 12.253198227656496 11.852914593911427 10 36.38190622451154 30.85701846558553 19.513964920531116 13.247110389371816 11 27.002244821479742 22.468146313863517 31.046873048180995 19.482735816475742 12 23.636574057064756 19.470611576077772 33.835723890632 23.05709047622547 13 23.836807724243336 22.37133609129186 35.710756038239126 18.081100146225687 14 18.482302283031206 28.863407572874035 31.114199322512142 21.540090821582616 15 16.293785040891756 26.09852966030083 36.82894166403363 20.778743634773793 16 18.701457113255103 25.62834794365535 31.17573902756244 24.494455915527112 17 18.934848740916006 28.281352183465476 30.91975222461441 21.864046851004108 18 18.63018127576401 26.43993724787091 31.859472705763054 23.070408770602025 19 19.545653276116717 27.585494264866888 29.388699473146644 23.480152985869747 20 22.876696475152656 27.136529968917856 32.58049760821803 17.406275947711457 21 21.218706600730393 30.065636228699915 30.88585946168373 17.829797708885966 22 19.495870410240208 23.76176602420439 32.37916173736691 24.36320182818849 23 20.141945462962283 27.039536045734103 31.648676253389276 21.169842237914338 24 20.45717571330948 26.494037078131544 30.372599951503037 22.67618725705594 25 17.76458399159386 32.484054786870544 28.010944882468348 21.74041633906724 26 17.705891646030963 26.749932030773525 32.86183509563454 22.682341227560972 27 21.693848233902315 27.725382280973758 30.032753819135728 20.5480156659882 28 17.701850232564976 27.479866412914888 33.02312423304994 21.795159121470192 29 19.50367768625405 22.869532151281128 35.40700707614758 22.219783086317243 30 19.147390349104644 27.410886833074926 32.668214650491215 20.77350816732921 31 21.852749263360547 24.775150450801302 28.05971739497836 25.31238289085979 32 22.458410181422725 25.588668611443815 30.34697371611642 21.60594749101704 33 21.01929958630622 24.348138377997074 28.795254645788482 25.837307389908222 34 19.00676753054941 22.98710054301901 31.455606910082224 26.55052501634935 35 19.84958593882035 22.203984833677463 31.535608526647614 26.410820700854575 36 20.413271267019862 24.951870439632305 32.15816990102211 22.476688392325723 37 18.77126334584947 23.711156505573477 35.00837674791132 22.50920340066573 38 19.993607218699253 24.53597225385955 28.60650226686555 26.86391826057564 39 20.148191283773357 23.89917408204804 30.949970975303287 25.002663658875314 40 19.09981189057322 22.739839519145278 30.365251927019422 27.795096663262083 41 17.70910640674255 23.847646060356674 30.748726954758215 27.694520578142566 42 19.40723486490657 23.403733531240125 32.67675672895342 24.512274874899884 43 21.170485190056652 23.68286661131155 31.706541946197763 23.440106252434035 44 20.261259010515023 23.52800699531931 31.785900610620832 24.424833383544833 45 20.219926372794674 22.294181834213873 30.396848432298977 27.08904336069248 46 22.796327457363088 24.760546252140113 29.517014350691817 22.926111939804983 47 17.213574005628587 23.80236385947638 35.38101343953678 23.603048695358254 48 19.397957983996005 23.040924822361507 31.187404016430182 26.373713177212306 49 19.27083716042942 21.689439419212146 34.419983687385646 24.61973973297279 50 19.612703999529728 21.45568039032706 32.47404310351162 26.457572506631593 51 18.92134674592736 20.96189314502796 30.167038966573838 29.949721142470846 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 407.0 1 955.0 2 1503.0 3 7266.5 4 13030.0 5 8583.5 6 4137.0 7 4058.0 8 3979.0 9 3908.5 10 3838.0 11 3779.0 12 3720.0 13 3625.5 14 3531.0 15 3522.0 16 3513.0 17 3504.0 18 3495.0 19 3440.5 20 3386.0 21 3799.5 22 4213.0 23 4605.0 24 4997.0 25 6203.0 26 9040.5 27 10672.0 28 12618.0 29 14564.0 30 17308.5 31 20053.0 32 22569.0 33 25085.0 34 27667.5 35 30250.0 36 34746.5 37 39243.0 38 41855.5 39 44468.0 40 49145.5 41 53823.0 42 58627.5 43 63432.0 44 70271.0 45 77110.0 46 111595.5 47 146081.0 48 128673.5 49 111266.0 50 107115.5 51 102965.0 52 86769.0 53 70573.0 54 62509.5 55 54446.0 56 47855.0 57 41264.0 58 37232.5 59 33201.0 60 31049.5 61 28898.0 62 25321.5 63 21745.0 64 17925.0 65 14105.0 66 11815.5 67 9526.0 68 7558.0 69 5590.0 70 4627.5 71 3665.0 72 3085.5 73 2506.0 74 1989.0 75 1145.5 76 819.0 77 637.5 78 456.0 79 321.0 80 186.0 81 121.5 82 57.0 83 42.5 84 28.0 85 19.5 86 11.0 87 10.5 88 10.0 89 5.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1088728.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 30.655124707184576 #Duplication Level Percentage of deduplicated Percentage of total 1 74.09564903347949 22.714113613810945 2 10.8018158581649 6.62262024392178 3 4.040739986584532 3.7160816459416846 4 2.047386649887622 2.510515723045196 5 1.2329462880801092 1.8898061109178033 6 0.7909179200556646 1.4547412483472066 7 0.631705114942321 1.3555499353706253 8 0.4501121271415214 1.1038594711791565 9 0.3791614187658435 1.0460916518777972 >10 4.912990259957181 36.02479597665278 >50 0.5620380917166192 10.763276650836652 >100 0.04453875516653755 2.47219618347727 >500 0.005150740393376116 1.0031077424749413 >1k 0.0033328320192433695 2.343092501797717 >5k 6.05969458044249E-4 1.2901080132386051 >10k+ 9.089541870663736E-4 3.690043287109902 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCTTC 15064 1.3836330102651901 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCG 14287 1.3122653224680545 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGC 10378 0.9532224761372905 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 8046 0.739027562439838 No Hit GCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCTTCTGC 5844 0.5367731885282642 No Hit GAACTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCTTCT 4239 0.3893534473256865 No Hit GAATGACTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCT 3249 0.29842164434091895 No Hit CCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCTTCTGC 3170 0.2911654701633466 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTTGTCCCTT 2905 0.26682513906136335 No Hit CTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCTTCTGCT 2407 0.2210836866508439 No Hit GAATGATCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTC 2156 0.1980292598334938 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTA 1968 0.18076140229699245 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCC 1691 0.1553188675224666 No Hit GAATGCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCTT 1324 0.12160980520387094 No Hit TCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCTTCTGC 1117 0.10259679185251046 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.22705395654378321 0.0 2 0.0 0.0 0.0 1.2814954699429058 0.0 3 0.0 0.0 0.0 1.6105951165029282 0.0 4 0.0 0.0 0.0 2.3564196015901127 0.0 5 0.0 0.0 0.0 4.806342814734259 0.0 6 0.0 0.0 0.0 5.792723251353873 0.0 7 0.0 0.0 0.0 6.9254212255035235 0.0 8 0.0 0.0 0.0 8.311534194031935 0.0 9 0.0 0.0 0.0 8.861901227854892 0.0 10 0.0 0.0 0.0 11.411573873364146 0.0 11 0.0 0.0 0.0 12.982673358267629 0.0 12 0.0 0.0 0.0 15.296749968770897 0.0 13 0.0 0.0 0.0 15.89423620959505 0.0 14 0.0 0.0 0.0 16.158856941311328 0.0 15 0.0 0.0 0.0 16.69434422555496 0.0 16 0.0 0.0 0.0 17.410409211483493 0.0 17 0.0 0.0 0.0 18.322850151736706 0.0 18 0.0 0.0 0.0 19.293524186022587 0.0 19 0.0 0.0 0.0 20.212210947086877 0.0 20 0.0 0.0 0.0 20.8323842135042 0.0 21 0.0 0.0 0.0 21.479377769286728 0.0 22 0.0 0.0 0.0 22.259646119140868 0.0 23 9.185030604521975E-5 0.0 0.0 22.929326700516565 0.0 24 9.185030604521975E-5 0.0 0.0 23.4638036313937 0.0 25 9.185030604521975E-5 0.0 0.0 23.941884474359068 0.0 26 9.185030604521975E-5 0.0 0.0 24.37440756552601 0.0 27 9.185030604521975E-5 0.0 0.0 24.876185787451043 0.0 28 9.185030604521975E-5 0.0 0.0 25.345724551954206 0.0 29 9.185030604521975E-5 0.0 0.0 25.841348803374213 0.0 30 9.185030604521975E-5 0.0 0.0 26.371049518336996 0.0 31 9.185030604521975E-5 0.0 0.0 26.870439632304855 0.0 32 9.185030604521975E-5 0.0 0.0 27.339151744053613 0.0 33 9.185030604521975E-5 0.0 0.0 27.797944022749483 0.0 34 9.185030604521975E-5 0.0 0.0 28.2289975090197 0.0 35 9.185030604521975E-5 0.0 0.0 28.701659183928403 0.0 36 1.837006120904395E-4 0.0 0.0 29.16072701354241 0.0 37 1.837006120904395E-4 0.0 0.0 29.604088440822686 0.0 38 1.837006120904395E-4 0.0 0.0 30.043959556473244 0.0 39 1.837006120904395E-4 0.0 0.0 30.481626264778715 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGTTTA 20 7.033121E-4 45.000004 38 AGCCGGT 20 7.033121E-4 45.000004 13 ACGATAG 20 7.033121E-4 45.000004 1 CGTAATC 20 7.033121E-4 45.000004 43 CTCGACG 20 7.033121E-4 45.000004 1 ACGGTCG 20 7.033121E-4 45.000004 29 ACTCGTC 25 3.89067E-5 45.0 42 GCATCGC 25 3.89067E-5 45.0 22 AATCGCG 55 1.8189894E-12 45.0 1 AGTAACG 25 3.89067E-5 45.0 1 AACGTCC 30 2.165396E-6 44.999996 40 ATAGGCG 30 2.165396E-6 44.999996 1 CGCCCCA 30 2.165396E-6 44.999996 14 CCGATGA 2050 0.0 42.365852 18 CGTTTTT 3830 0.0 42.003914 1 ACGGGTC 75 0.0 42.0 5 TATAGCG 70 0.0 41.785713 1 CGATGAA 2150 0.0 41.755814 19 TTGTGCG 115 0.0 41.086956 1 CGGCGAT 455 0.0 41.043957 31 >>END_MODULE