SRR3551345_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551345_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	556101
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4708	0.8466087994806699	No Hit
GAATCTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGTCTTC	4457	0.8014731136969723	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCG	3916	0.704188627605417	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCACGCACATTCGTATGC	3438	0.6182330188221205	No Hit
GCTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGTCTTCTGC	1755	0.31559015358720804	No Hit
GAATGCTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGTCTT	1447	0.2602045311912764	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCC	1117	0.20086279290992107	No Hit
GAACTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGTCTTCT	969	0.17424892240797984	No Hit
GAATGACTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGTCT	962	0.17299015826261777	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCACGCACATT	871	0.15662622437291066	No Hit
CCTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGTCTTCTGC	849	0.152670108487487	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGTC	736	0.1323500587123562	No Hit
CTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGTCTTCTGCT	734	0.13199041181368132	No Hit
TCTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGTCTTCTGC	698	0.12551676763753347	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCACGCACATTCGTA	695	0.12497729728952116	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTATAGT	20	7.0301414E-4	45.000004	13
TCGTGCG	35	1.2104101E-7	45.000004	1
TCGAGCA	20	7.0301414E-4	45.000004	17
TTGGACG	25	3.8882004E-5	45.0	1
TGGATCG	25	3.8882004E-5	45.0	35
GTACGAG	25	3.8882004E-5	45.0	1
CGGGACG	30	2.1634733E-6	44.999996	6
TACGTAG	30	2.1634733E-6	44.999996	1
CATACGA	125	0.0	43.199997	18
CGTTTTT	2075	0.0	40.987953	1
CGATGAA	710	0.0	40.880283	19
TACGGGA	105	0.0	40.714287	4
GTTACGG	45	1.9252184E-8	40.000004	2
CGAGGGT	45	1.9252184E-8	40.000004	4
CTAGGGT	45	1.9252184E-8	40.000004	4
GCATATC	90	0.0	40.000004	28
GATGAAT	765	0.0	40.0	20
CGTGCGG	80	0.0	39.375004	2
TAGACGG	40	3.4539335E-7	39.375004	2
CGAATGC	80	0.0	39.375004	45