SRR3551343_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551343_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	560691
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2840	0.506517850295439	No Hit
GCTGTCTCTTATACACATCTGACGCAAGAGCGTTCGTATGCCGTCTTCTGC	1168	0.20831438350178616	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAAGAGCGTTCGTATGCC	1136	0.20260714011817563	No Hit
CCTGTCTCTTATACACATCTGACGCAAGAGCGTTCGTATGCCGTCTTCTGC	1101	0.19636484266735152	No Hit
AGCTACCATTACATTTATTATTTTACTTCTACTCACAATTCTAGAATTTGC	1029	0.18352354505422772	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAAGAGCGTTCGTATGCCG	1015	0.1810266260738981	No Hit
GAATCTGTCTCTTATACACATCTGACGCAAGAGCGTTCGTATGCCGTCTTC	993	0.17710289624766584	No Hit
GCTAAAGGTGTAATTTGAAATGGCCTTCGGGTAAATGCAAGATACTTAACT	906	0.16158632829847455	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAAGAGCGTTCGTATGC	900	0.1605162201640476	No Hit
CTGTCTCTTATACACATCTGACGCAAGAGCGTTCGTATGCCGTCTTCTGCT	726	0.12948308426566504	Illumina Single End Adapter 2 (95% over 21bp)
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	723	0.12894803019845155	No Hit
CAAGGAAGGTGAAATAATCTATATCTTTTATTTTGTTTTGGTTTAATATAA	671	0.11967375970008436	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	583	0.10397884039515526	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	566	0.10094686734761213	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGCGAT	25	3.88824E-5	45.0	16
AACGTAT	20	7.0301926E-4	45.0	23
GTACCGG	50	2.1827873E-11	45.0	2
CCGATTA	20	7.0301926E-4	45.0	11
TCCGATC	20	7.0301926E-4	45.0	15
CGTTGTA	25	3.88824E-5	45.0	16
TTCACGG	35	1.2104465E-7	45.0	2
CGACCTA	20	7.0301926E-4	45.0	44
CACGCAT	20	7.0301926E-4	45.0	24
CGACCGT	20	7.0301926E-4	45.0	23
TTCAATC	25	3.88824E-5	45.0	40
GTTAGGC	20	7.0301926E-4	45.0	40
CGCGATT	25	3.88824E-5	45.0	17
CGTTAGA	20	7.0301926E-4	45.0	36
ATATCCG	20	7.0301926E-4	45.0	18
CGTAGAC	20	7.0301926E-4	45.0	12
CTACCGT	20	7.0301926E-4	45.0	13
GTTCACG	20	7.0301926E-4	45.0	23
CGTAAGG	50	2.1827873E-11	45.0	2
GTATACG	35	1.2104465E-7	45.0	1