SRR3551339_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551339_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	975291
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8062	0.8266250790789621	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGAGTCGATCGTATGCCG	5176	0.5307133973347442	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGAGTCGATCGTATGC	4445	0.45576140864623993	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGAGTCGATCGTATGCCGTCTTC	4217	0.43238377058744515	No Hit
GCTGTCTCTTATACACATCTGACGCTGAGTCGATCGTATGCCGTCTTCTGC	1746	0.17902349145024407	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTGAGTCGAT	1374	0.1408810293543158	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1252	0.12837194232285545	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGAGTCGATCGTATGCC	1211	0.12416806881228269	No Hit
GAACTGTCTCTTATACACATCTGACGCTGAGTCGATCGTATGCCGTCTTCT	1079	0.11063364677824361	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CACTACG	20	7.03276E-4	45.0	23
TATAGCG	30	2.165163E-6	44.999996	1
CCGGTAT	30	2.165163E-6	44.999996	42
CGATCGA	195	0.0	42.692307	41
TACGGGT	80	0.0	42.1875	4
CCGATGA	1335	0.0	40.955055	18
TACGGCT	495	0.0	40.90909	7
CGTTTTT	3240	0.0	40.90278	1
CGATGAA	1400	0.0	40.339287	19
CGAATGC	185	0.0	40.135136	45
CGGTCTA	45	1.927765E-8	40.0	31
GAGTACG	35	6.2473173E-6	38.571426	1
GTTACCG	35	6.2473173E-6	38.571426	38
ACGGCTG	535	0.0	37.850468	8
CGAAAGG	125	0.0	37.8	2
TATTGCG	30	1.13979506E-4	37.499996	1
TGTTGCG	60	1.546141E-10	37.499996	1
ATAAGCG	30	1.13979506E-4	37.499996	1
TACTAGC	30	1.13979506E-4	37.499996	35
TAAGACG	30	1.13979506E-4	37.499996	1