SRR3551338_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551338_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	650383
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3251	0.4998593136659476	No Hit
GCTGTCTCTTATACACATCTGACGCAGATGCCTTCGTATGCCGTCTTCTGC	2049	0.31504513494356406	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGATGCCTTCGTATGCCG	1830	0.2813726681047936	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGATGCCTTCGTATGC	1587	0.24401006791382923	No Hit
CTGTCTCTTATACACATCTGACGCAGATGCCTTCGTATGCCGTCTTCTGCT	1549	0.2381673567728554	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGATGCCTTCGTATGCCGTCTTC	1379	0.21202891219481443	No Hit
CCTGTCTCTTATACACATCTGACGCAGATGCCTTCGTATGCCGTCTTCTGC	1246	0.19157942320140595	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGATGCCTTCGTATGCC	1228	0.18881182318726042	No Hit
AGCTACCATTACATTTATTATTTTACTTCTACTCACAATTCTAGAATTTGC	1015	0.15606188968653856	No Hit
CAAGGAAGGTGAAATAATCTATATCTTTTATTTTGTTTTGGTTTAATATAA	959	0.1474515785314192	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	830	0.12761711176337634	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	784	0.12054435617167115	No Hit
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	734	0.11285657835460028	No Hit
TCTGTCTCTTATACACATCTGACGCAGATGCCTTCGTATGCCGTCTTCTGC	712	0.10947395611508912	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGCGAA	20	7.031024E-4	45.000004	31
GGTACGA	20	7.031024E-4	45.000004	7
TCACCGC	20	7.031024E-4	45.000004	39
ATGTGCG	30	2.1640426E-6	45.000004	1
TAACGAT	20	7.031024E-4	45.000004	45
TAACGAC	20	7.031024E-4	45.000004	18
CGAATTG	20	7.031024E-4	45.000004	36
CGCAGTC	20	7.031024E-4	45.000004	42
AACGACC	20	7.031024E-4	45.000004	19
AATTCGC	20	7.031024E-4	45.000004	44
GCGATAT	40	6.8066583E-9	45.000004	9
ACGTACG	20	7.031024E-4	45.000004	38
TAGGACG	20	7.031024E-4	45.000004	1
GATTCGC	20	7.031024E-4	45.000004	29
CGATATT	20	7.031024E-4	45.000004	10
GGCAATC	25	3.8889317E-5	45.0	8
TACGACG	35	1.2108467E-7	45.0	1
TTCGGAT	25	3.8889317E-5	45.0	21
GCGTAAG	90	0.0	45.0	1
CGTAAGG	95	0.0	42.63158	2