##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551335_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 469409 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.715829905263853 33.0 31.0 34.0 30.0 34.0 2 31.85532233084581 33.0 31.0 34.0 30.0 34.0 3 31.8081374664738 33.0 31.0 34.0 30.0 34.0 4 35.49769177838516 37.0 35.0 37.0 33.0 37.0 5 33.446316538455804 37.0 35.0 37.0 30.0 37.0 6 34.36836958814168 37.0 35.0 37.0 30.0 37.0 7 35.49284525861243 37.0 35.0 37.0 32.0 37.0 8 35.41626172484976 37.0 35.0 37.0 33.0 37.0 9 37.33918821326391 39.0 37.0 39.0 34.0 39.0 10 36.84043339603629 39.0 37.0 39.0 33.0 39.0 11 36.88114203178891 39.0 37.0 39.0 33.0 39.0 12 36.903210206877155 39.0 37.0 39.0 33.0 39.0 13 36.996974919526465 39.0 37.0 39.0 33.0 39.0 14 38.048079606483896 40.0 37.0 41.0 33.0 41.0 15 38.16003740874163 40.0 37.0 41.0 33.0 41.0 16 38.25236627333519 40.0 37.0 41.0 34.0 41.0 17 38.09445281194012 40.0 37.0 41.0 33.0 41.0 18 38.09294453238008 40.0 37.0 41.0 34.0 41.0 19 38.015236179962464 40.0 37.0 41.0 34.0 41.0 20 38.092367210684074 40.0 37.0 41.0 34.0 41.0 21 38.02665479358087 40.0 37.0 41.0 34.0 41.0 22 38.15709115078748 40.0 37.0 41.0 34.0 41.0 23 38.178496790645255 40.0 37.0 41.0 34.0 41.0 24 38.085443611008735 40.0 37.0 41.0 34.0 41.0 25 37.83097256337224 40.0 36.0 41.0 33.0 41.0 26 37.916152012424135 40.0 37.0 41.0 34.0 41.0 27 37.540379498475744 40.0 36.0 41.0 33.0 41.0 28 37.602681243861966 40.0 36.0 41.0 33.0 41.0 29 37.889987196666446 40.0 37.0 41.0 33.0 41.0 30 37.63314082175672 40.0 36.0 41.0 33.0 41.0 31 37.61408281477347 40.0 36.0 41.0 33.0 41.0 32 37.638385714803086 40.0 37.0 41.0 33.0 41.0 33 37.63034155714952 40.0 37.0 41.0 33.0 41.0 34 37.53532846622029 40.0 37.0 41.0 33.0 41.0 35 37.509374553960406 40.0 37.0 41.0 33.0 41.0 36 37.34439902089649 40.0 36.0 41.0 33.0 41.0 37 37.28254890724294 40.0 36.0 41.0 33.0 41.0 38 37.174856042385215 40.0 36.0 41.0 32.0 41.0 39 37.110651904842044 40.0 36.0 41.0 32.0 41.0 40 37.067981227458354 40.0 36.0 41.0 32.0 41.0 41 36.98876672581906 40.0 35.0 41.0 31.0 41.0 42 37.082188453992146 40.0 36.0 41.0 32.0 41.0 43 36.99034530654504 40.0 36.0 41.0 32.0 41.0 44 37.128666046028094 40.0 36.0 41.0 32.0 41.0 45 37.132496394402324 40.0 36.0 41.0 33.0 41.0 46 36.99614834824215 40.0 35.0 41.0 32.0 41.0 47 36.928544190673804 39.0 35.0 41.0 32.0 41.0 48 36.923267342552016 39.0 35.0 41.0 32.0 41.0 49 36.936253885204586 39.0 35.0 41.0 32.0 41.0 50 36.82813069199781 39.0 35.0 41.0 32.0 41.0 51 36.01409431860063 38.0 35.0 40.0 29.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 2.0 8 13.0 9 16.0 10 26.0 11 19.0 12 16.0 13 23.0 14 22.0 15 26.0 16 45.0 17 70.0 18 102.0 19 236.0 20 484.0 21 939.0 22 1544.0 23 2030.0 24 2479.0 25 2952.0 26 3624.0 27 4018.0 28 4178.0 29 4673.0 30 5756.0 31 7680.0 32 10408.0 33 15322.0 34 26854.0 35 34091.0 36 36042.0 37 55825.0 38 100004.0 39 149838.0 40 52.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.76718171147123 20.66279087107405 23.47249413624366 13.097533281211055 2 30.44360035704471 27.53014961366314 25.555752020093355 16.4704980091988 3 31.18304080237064 26.330130014550214 27.473269579407294 15.01355960367185 4 28.19524125016776 24.654618893118794 29.98280816942155 17.16733168729189 5 26.1153919076967 33.13954355370263 23.2157883636658 17.529276174934864 6 25.086012411351295 36.61284721852372 23.833586488541975 14.467553881583012 7 78.28354377525783 5.414041912276927 12.405173313677412 3.8972409987878374 8 79.21045399640825 8.43315743839594 8.34836997160259 4.008018593593221 9 73.18756138037405 8.189872797496427 10.16064881585142 8.461917006278107 10 37.371247675268265 35.67315496720344 16.345447147370418 10.61015021015788 11 27.495425098368376 23.35894710156814 31.351124499104195 17.794503300959292 12 24.954570534437984 21.963575474692647 32.348761953861136 20.733092037008237 13 23.60904882522491 23.818461086174317 34.29567818256574 18.276811906035036 14 17.876734361718672 30.394602574726942 31.06480702329951 20.663856040254874 15 17.327533132087368 27.3952991953712 36.158446045985485 19.118721626555946 16 19.989603948795185 27.04975831311287 31.813194889744338 21.147442848347602 17 19.86838769601776 28.693101325283493 29.87735642052027 21.561154558178476 18 19.719903112211313 27.65243103562139 31.858997164519643 20.768668687647658 19 21.54815949417246 27.457505075531145 29.897807668792037 21.096527761504362 20 24.23472920203916 27.617280452654295 31.785287457206827 16.36270288809972 21 22.56773943405431 29.36479701070921 30.45254777816361 17.614915777072873 22 21.84704596631083 24.480144181300314 31.903308202441792 21.769501649947063 23 20.73117473248276 28.015227658609014 30.856459931530928 20.397137677377298 24 20.435057700214525 27.142428031844297 31.76867081798602 20.653843449955154 25 19.290639932340454 30.828978566665743 28.922964834504665 20.95741666648914 26 18.223553446993986 30.36499087150012 31.252915900632498 20.158539780873397 27 20.69815448787731 30.32898815318837 30.074412718972155 18.898444639962165 28 17.423824426033587 30.010076500450566 32.849178435010835 19.716920638505016 29 20.276134458436033 25.24642688998294 33.477628251695215 20.999810399885813 30 19.491743873679457 28.2235747503776 32.06457481641809 20.22010655952485 31 21.727960051895042 27.79878528106619 27.77087784852868 22.702376818510082 32 23.941168575804895 29.19990882151812 27.97879887262494 18.880123730052045 33 21.84257225575138 27.5708390763705 27.690351058458617 22.896237609419504 34 20.005368452671338 27.044858534881094 29.89418609357724 23.055586918870326 35 21.096314727668194 26.74703723192355 30.1253278058154 22.03132023459286 36 21.306792157798423 28.2295396977902 29.9039856500408 20.55968249437058 37 20.454869846977797 28.3961321576706 31.17643675344955 19.97256124190205 38 20.201785649614727 29.866065627203568 26.630720757377897 23.301427965803807 39 23.22430971711237 26.225743434829752 27.903384894622814 22.646561953435064 40 20.06118331774636 26.037421523660605 30.02861044419685 23.872784714396186 41 19.285101052600183 27.21613773915711 29.277240104045728 24.22152110419698 42 20.986602302043632 28.02502721507257 29.904837785385453 21.083532697498345 43 22.628028009688776 26.363363292991828 29.405486473416577 21.603122223902822 44 20.834283109186234 26.24172097254207 30.279777337034442 22.644218581237258 45 20.53113596032458 26.508013267747316 28.678401990588164 24.28244878133994 46 23.016601726852276 27.655839577000012 28.071894659028697 21.255664037119015 47 19.41121708360939 26.620069065569684 32.03155457181264 21.937159279008284 48 20.616349494790256 25.507180305447914 29.889286315345466 23.987183884416364 49 20.42738848211261 24.586235031710086 32.37688242023481 22.609494065942492 50 20.155131239494768 25.54552639595747 30.52114467340848 23.778197691139283 51 19.62787249498838 25.460951963000284 27.973686060556997 26.937489481454342 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 247.0 1 583.0 2 919.0 3 2295.5 4 3672.0 5 2513.0 6 1354.0 7 1296.5 8 1239.0 9 1202.0 10 1165.0 11 1207.5 12 1250.0 13 1274.0 14 1298.0 15 1214.5 16 1131.0 17 1273.0 18 1415.0 19 1651.5 20 1888.0 21 2046.0 22 2204.0 23 2509.5 24 2815.0 25 3627.0 26 5759.0 27 7079.0 28 8138.0 29 9197.0 30 10502.0 31 11807.0 32 13558.0 33 15309.0 34 16073.5 35 16838.0 36 17721.0 37 18604.0 38 20422.5 39 22241.0 40 23968.5 41 25696.0 42 27945.0 43 30194.0 44 32708.5 45 35223.0 46 43184.5 47 51146.0 48 48108.0 49 45070.0 50 42524.5 51 39979.0 52 34112.0 53 28245.0 54 24564.5 55 20884.0 56 18956.0 57 17028.0 58 15944.5 59 14861.0 60 13168.0 61 11475.0 62 10511.5 63 9548.0 64 7592.5 65 5637.0 66 4725.5 67 3814.0 68 2822.5 69 1831.0 70 1469.0 71 1107.0 72 939.0 73 771.0 74 568.0 75 286.5 76 208.0 77 172.0 78 136.0 79 90.5 80 45.0 81 37.5 82 30.0 83 16.5 84 3.0 85 2.0 86 1.0 87 0.5 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 469409.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.412530072470705 #Duplication Level Percentage of deduplicated Percentage of total 1 74.45043460197896 21.89775646639219 2 9.835258990407583 5.785597016518017 3 3.4586806368170526 3.0518564472436105 4 1.6866480106522985 1.9843434133993445 5 1.0337977536996021 1.5203303759771105 6 0.7363048173958019 1.2993952550495445 7 0.5834335903430322 1.201218061487779 8 0.45458706185333086 1.0696444501853755 9 0.41141436498004164 1.089066364399972 >10 6.954128916427016 49.00323082436112 >50 0.35439179092601236 6.238231537583584 >100 0.0314203031130279 1.7457849782881365 >500 0.005845637788470307 1.2865036168943476 >1k 0.0036535236177939415 2.827041192219888 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GAATGATACGGCTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGC 3318 0.7068462683928088 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCG 3229 0.6878862569741951 No Hit GAATCTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTCTTC 2823 0.6013945194915309 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1989 0.4237243001305897 No Hit GCTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTCTTCTGC 1795 0.38239573591473536 No Hit CCTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTCTTCTGC 951 0.20259517819215225 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTTAGCCAGT 946 0.20153000901133128 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCC 923 0.19663023077955474 No Hit CTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTCTTCTGCT 887 0.1889610126776436 No Hit GAATGACTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTCT 659 0.14038929803220646 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTA 564 0.12015108359660766 No Hit TCTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTCTTCTGC 545 0.11610344070948789 No Hit GAACTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTCTTCT 511 0.10886029027990515 No Hit GAATGATCTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTC 483 0.10289534286730762 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.19492596009024113 0.0 2 0.0 0.0 0.0 0.9929507103613266 0.0 3 0.0 0.0 0.0 1.2110973585934655 0.0 4 0.0 0.0 0.0 1.6341825572155626 0.0 5 0.0 0.0 0.0 3.124141207347963 0.0 6 0.0 0.0 0.0 3.7234053884778517 0.0 7 0.0 0.0 0.0 4.415765356011495 0.0 8 0.0 0.0 0.0 5.330106580828233 0.0 9 0.0 0.0 0.0 5.641349015464126 0.0 10 0.0 0.0 0.0 7.098926522499569 0.0 11 0.0 0.0 0.0 8.283181617736345 0.0 12 0.0 0.0 0.0 9.961888246710226 0.0 13 0.0 0.0 0.0 10.367717704603022 0.0 14 0.0 0.0 0.0 10.546666126980949 0.0 15 0.0 0.0 0.0 10.94354816375485 0.0 16 0.0 0.0 0.0 11.510857269460109 0.0 17 0.0 0.0 0.0 12.203430270829916 0.0 18 0.0 0.0 0.0 12.91709362197998 0.0 19 0.0 0.0 0.0 13.570894465167903 0.0 20 0.0 0.0 0.0 14.05085969804584 0.0 21 0.0 0.0 0.0 14.5866397959988 0.0 22 0.0 0.0 0.0 15.192934093722107 0.0 23 0.0 0.0 0.0 15.714440924652063 0.0 24 0.0 0.0 0.0 16.118140044183217 0.0 25 0.0 0.0 0.0 16.481362734843174 0.0 26 0.0 0.0 0.0 16.816891026801787 0.0 27 0.0 0.0 0.0 17.172657533196 0.0 28 0.0 0.0 0.0 17.518624483126654 0.0 29 0.0 0.0 0.0 17.88078200460579 0.0 30 0.0 0.0 0.0 18.31004518447665 0.0 31 0.0 0.0 0.0 18.70948362728452 0.0 32 0.0 0.0 0.0 19.089109923329122 0.0 33 0.0 0.0 0.0 19.439976651491556 0.0 34 0.0 0.0 0.0 19.796169225558096 0.0 35 0.0 0.0 0.0 20.158113713201068 0.0 36 0.0 0.0 0.0 20.528792588126773 0.0 37 0.0 0.0 0.0 20.893932583312207 0.0 38 0.0 0.0 0.0 21.2456514468193 0.0 39 0.0 0.0 0.0 21.59843547950721 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AACGTAT 20 7.029017E-4 45.0 22 CTATGCG 25 3.8872677E-5 45.0 1 GTACCTC 25 3.8872677E-5 45.0 34 CGGCGAA 35 1.2098826E-7 45.0 31 CGAACAC 25 3.8872677E-5 45.0 34 TTGTGCG 35 1.2098826E-7 45.0 1 GTACACG 20 7.029017E-4 45.0 1 GCGAACA 25 3.8872677E-5 45.0 33 TCCGACC 20 7.029017E-4 45.0 29 CGACCCT 20 7.029017E-4 45.0 12 GCACGAG 25 3.8872677E-5 45.0 1 TAACGAA 25 3.8872677E-5 45.0 24 GCGTTAG 20 7.029017E-4 45.0 1 GCGCAAA 20 7.029017E-4 45.0 30 CCGTCGA 25 3.8872677E-5 45.0 41 CGGATCT 20 7.029017E-4 45.0 6 CTACGCG 20 7.029017E-4 45.0 1 TACGACC 20 7.029017E-4 45.0 38 TACGAAG 25 3.8872677E-5 45.0 1 CAAGGCG 20 7.029017E-4 45.0 1 >>END_MODULE