SRR3551330_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551330_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	840803
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTCTTC	13568	1.6136954792026192	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCG	11523	1.3704756048682034	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGC	9962	1.1848197496916637	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7341	0.8730939352024196	No Hit
GAACTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTCTTCT	3648	0.4338709543139118	No Hit
GCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTCTTCTGC	3639	0.4328005489989927	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCAAGCTGAT	2672	0.3177914446071196	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTCT	2271	0.2700989411312757	No Hit
GAATGCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTCTT	2239	0.2662930555671186	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTC	1834	0.218124816395755	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCAAGCTGATCGTA	1636	0.19457589946753281	No Hit
GAATGATACGGCGACCACCGATGAATGATACGGCGAAAACCGATCGAATGC	904	0.10751626718743867	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAACTA	20	7.0322043E-4	45.000004	41
CGTCTAC	20	7.0322043E-4	45.000004	42
CCTCGTA	65	0.0	45.000004	40
CGTAATC	20	7.0322043E-4	45.000004	11
CTCGACG	20	7.0322043E-4	45.000004	1
TTACGCG	20	7.0322043E-4	45.000004	1
ATCGCGT	20	7.0322043E-4	45.000004	15
TCGGTAA	20	7.0322043E-4	45.000004	22
ATGACCG	25	3.88991E-5	45.0	18
TCGACAC	35	1.2114106E-7	45.0	34
CCGACCG	30	2.1648048E-6	44.999996	40
TCGAATA	60	0.0	44.999996	44
GCGTACG	30	2.1648048E-6	44.999996	1
CGATCGA	835	0.0	44.191616	41
CGATGAA	4390	0.0	43.769928	19
CCGATCG	905	0.0	43.756905	40
CCGATGA	4300	0.0	43.48256	18
ATCGAAT	970	0.0	43.37629	43
CCGCGCC	120	0.0	43.124996	40
CGTAAGC	105	0.0	42.857143	43