SRR3551329_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551329_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	392406
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1854	0.47246983991070474	No Hit
GCTGTCTCTTATACACATCTGACGCGTGAGATGTCGTATGCCGTCTTCTGC	990	0.25228972034066754	RNA PCR Primer, Index 47 (95% over 23bp)
CCTGTCTCTTATACACATCTGACGCGTGAGATGTCGTATGCCGTCTTCTGC	797	0.2031059667793051	RNA PCR Primer, Index 17 (95% over 24bp)
GAATCTGTCTCTTATACACATCTGACGCGTGAGATGTCGTATGCCGTCTTC	701	0.17864150904930098	RNA PCR Primer, Index 17 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCGTGAGATGTCGTATGCCGTCTTCTGCT	700	0.17838667094794677	RNA PCR Primer, Index 17 (96% over 25bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTGAGATGTCGTATGCC	554	0.14118030815023214	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTGAGATGTCGTATGCCG	496	0.126399698271688	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTGAGATGTCGTATGC	446	0.11365779320397752	No Hit
GAATGCTGTCTCTTATACACATCTGACGCGTGAGATGTCGTATGCCGTCTT	404	0.10295459294710071	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTTAGCG	35	1.2091914E-7	45.000004	1
GCATATC	35	1.2091914E-7	45.000004	28
ACAACGT	20	7.0276024E-4	45.0	23
AGGTACG	20	7.0276024E-4	45.0	1
AGCCGGT	20	7.0276024E-4	45.0	32
CTCCGAG	25	3.8860937E-5	45.0	22
ATTAACG	25	3.8860937E-5	45.0	1
TGTGCCG	20	7.0276024E-4	45.0	1
CGCCTTG	20	7.0276024E-4	45.0	40
TCGTGCG	20	7.0276024E-4	45.0	1
TTGACGT	20	7.0276024E-4	45.0	20
TCGTCAG	20	7.0276024E-4	45.0	1
CACACCG	25	3.8860937E-5	45.0	17
CGCACGG	25	3.8860937E-5	45.0	2
TCGGTTA	25	3.8860937E-5	45.0	41
TCAACCC	20	7.0276024E-4	45.0	42
GATAGCG	20	7.0276024E-4	45.0	1
CGCCACT	20	7.0276024E-4	45.0	21
GCGTTAG	30	2.1618343E-6	44.999996	1
CTCGTAA	95	0.0	42.63158	33