SRR3551327_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551327_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	990064
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6464	0.652887086087364	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTTACAGCTCGTATGCCGTCTTC	3788	0.382601528790058	Illumina PCR Primer Index 11 (95% over 21bp)
GAATGATACCTGTCTCTTATACACATCTGACGCGTTACAGCTCGTATGCCG	2540	0.2565490715751709	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTTACAGCTCGTATGC	2414	0.24382262156789863	No Hit
GCTGTCTCTTATACACATCTGACGCGTTACAGCTCGTATGCCGTCTTCTGC	1848	0.18665460010665977	Illumina PCR Primer Index 11 (95% over 24bp)
GAATGCTGTCTCTTATACACATCTGACGCGTTACAGCTCGTATGCCGTCTT	1491	0.15059632508605503	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1229	0.12413338935664765	No Hit
CCTGTCTCTTATACACATCTGACGCGTTACAGCTCGTATGCCGTCTTCTGC	1146	0.11575009292328577	Illumina PCR Primer Index 11 (95% over 24bp)
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1138	0.11494206435139548	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGTCGTA	25	3.890413E-5	45.0	11
TCTAGCG	70	0.0	41.785717	1
CGTTTTT	2535	0.0	40.650887	1
CTCGAAT	50	1.0804797E-9	40.5	43
CGCTCGA	45	1.927765E-8	40.0	41
ACGGGCT	215	0.0	39.76744	5
TAATACG	40	3.4575714E-7	39.375	4
TACGAAT	195	0.0	39.23077	12
TTACGGG	370	0.0	38.91892	3
CGTAAGG	110	0.0	38.863636	2
ATTAGCG	35	6.24741E-6	38.57143	1
GCGAAAT	35	6.24741E-6	38.57143	19
GATCACG	35	6.24741E-6	38.57143	1
ACTACGG	70	0.0	38.57143	2
TTAGCGG	170	0.0	38.382355	2
CCGATGA	750	0.0	38.100002	18
GCGTTAG	125	0.0	37.800003	1
CGATGAA	790	0.0	37.594936	19
CCCCGCA	30	1.1398078E-4	37.499996	42
TGCGTAG	55	2.748493E-9	36.81818	1