SRR3551325_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551325_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	687001
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGCCG	7444	1.08355009672475	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGC	7272	1.0585137430658762	No Hit
GAATCTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGCCGTCTTC	6635	0.9657918984106282	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5087	0.7404647154807635	No Hit
GCTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGCCGTCTTCTGC	3313	0.482240928324704	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGCAAAGAGT	2045	0.2976706001883549	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGCCGTCT	1728	0.2515280181542676	No Hit
GAACTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGCCGTCTTCT	1316	0.19155721752952326	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGCC	1253	0.18238692520098224	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTA	1247	0.1815135640268355	No Hit
CTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGCCGTCTTCTGCT	1205	0.17540003580780814	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGCCGTC	1177	0.17132435032845658	No Hit
GAATGCTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGCCGTCTT	1147	0.16695754445772276	No Hit
CCTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGCCGTCTTCTGC	937	0.13638990336258608	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	901	0.13114973631770552	No Hit
AGCTACCATTACATTTATTATTTTACTTCTACTCACAATTCTAGAATTTGC	777	0.11310027205200576	No Hit
TCTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGCCGTCTTCTGC	690	0.1004365350268777	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCGATCG	20	7.031302E-4	45.000004	40
ATTCGCG	35	1.210974E-7	45.000004	1
ACGATTT	35	1.210974E-7	45.000004	38
CATAGCG	20	7.031302E-4	45.000004	1
CGAATTG	20	7.031302E-4	45.000004	44
TTTGCCG	20	7.031302E-4	45.000004	1
GGTCGAA	25	3.8891616E-5	45.0	42
CGTTAAG	25	3.8891616E-5	45.0	22
TACGAGA	25	3.8891616E-5	45.0	35
CGGTCGA	25	3.8891616E-5	45.0	41
AACACGT	25	3.8891616E-5	45.0	41
TCGTTAG	30	2.1642227E-6	44.999996	1
CCACGCT	30	2.1642227E-6	44.999996	43
CGATGAA	1130	0.0	43.00885	19
CCGATGA	1115	0.0	42.17489	18
TACGGCT	895	0.0	41.98324	7
ACGGCTG	915	0.0	41.557377	8
GTCGAAT	125	0.0	41.4	43
CGTATGG	60	3.6379788E-12	41.249996	2
TCGACGG	60	3.6379788E-12	41.249996	2