SRR3551321_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551321_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	830220
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCG	13416	1.6159572161595719	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCGTCTTC	11696	1.408783214087832	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGC	11599	1.3970995639709958	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10624	1.279660812796608	No Hit
GCTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCGTCTTCTGC	4988	0.6008046060080461	No Hit
GAACTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCGTCTTCT	3686	0.44397870443978704	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCGTCT	3033	0.36532485365324857	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGGCGAAAAT	3007	0.3621931536219315	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGGCGAAAATCGTA	2410	0.290284502902845	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCGTC	2202	0.26523090265230903	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCC	2106	0.25366770253667703	No Hit
CTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCGTCTTCTGCT	1609	0.1938040519380405	No Hit
CCTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCGTCTTCTGC	1048	0.12623160126231603	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1022	0.12309990123099901	No Hit
GAATGCTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCGTCTT	953	0.11478885114788852	No Hit
AGCTACCATTACATTTATTATTTTACTTCTACTCACAATTCTAGAATTTGC	913	0.10997085109970851	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	857	0.1032256510322565	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AATCCGT	30	2.1647702E-6	45.000004	18
CGTATAT	30	2.1647702E-6	45.000004	22
CGTTCGG	20	7.032153E-4	45.000004	45
CCGTATA	30	2.1647702E-6	45.000004	21
TCCGTAT	30	2.1647702E-6	45.000004	20
CTACCCG	20	7.032153E-4	45.000004	34
CCGCGTA	20	7.032153E-4	45.000004	40
TCGACCG	20	7.032153E-4	45.000004	24
CGTCATA	30	2.1647702E-6	45.000004	38
GATTACG	20	7.032153E-4	45.000004	1
TCGAATA	20	7.032153E-4	45.000004	44
CCCTACG	25	3.889866E-5	45.0	32
GTACTAG	45	3.8380676E-10	45.0	1
CGATGCA	35	1.2113742E-7	45.0	10
GACGATA	25	3.889866E-5	45.0	22
CGATGAA	2295	0.0	42.941177	19
CGTTTTT	5540	0.0	42.847473	1
CCGATGA	2245	0.0	42.694874	18
GATGAAT	2495	0.0	42.65531	20
CGTAAGC	80	0.0	42.187504	43