##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551320_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 938091 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.623799823258086 31.0 31.0 34.0 30.0 34.0 2 31.757577889565084 33.0 31.0 34.0 30.0 34.0 3 31.694158669041702 33.0 31.0 34.0 30.0 34.0 4 35.38411518711937 37.0 35.0 37.0 33.0 37.0 5 33.41684868525548 37.0 35.0 37.0 30.0 37.0 6 34.33617527510657 37.0 35.0 37.0 30.0 37.0 7 35.43103174425509 37.0 35.0 37.0 32.0 37.0 8 35.3743453460272 37.0 35.0 37.0 33.0 37.0 9 37.26616714156729 39.0 37.0 39.0 34.0 39.0 10 36.620591179320556 38.0 35.0 39.0 32.0 39.0 11 36.770595816397346 39.0 37.0 39.0 33.0 39.0 12 36.85223181972751 39.0 37.0 39.0 33.0 39.0 13 36.99708130661098 39.0 37.0 39.0 33.0 39.0 14 38.043701517230204 40.0 37.0 41.0 33.0 41.0 15 38.110769637487195 40.0 37.0 41.0 33.0 41.0 16 38.16829177553137 40.0 37.0 41.0 34.0 41.0 17 38.05254927293834 40.0 37.0 41.0 33.0 41.0 18 37.999915786421575 39.0 37.0 41.0 33.0 41.0 19 37.88409013624478 39.0 37.0 41.0 33.0 41.0 20 38.02351157830104 40.0 37.0 41.0 34.0 41.0 21 37.907339479858564 40.0 36.0 41.0 33.0 41.0 22 38.067456142314555 40.0 37.0 41.0 34.0 41.0 23 38.13659016022966 40.0 37.0 41.0 34.0 41.0 24 38.007461962645415 40.0 37.0 41.0 34.0 41.0 25 37.722955448885024 39.0 36.0 41.0 33.0 41.0 26 37.831172029152825 40.0 36.0 41.0 33.0 41.0 27 37.483974369224306 40.0 36.0 41.0 33.0 41.0 28 37.52105605959336 40.0 36.0 41.0 33.0 41.0 29 37.737048964332885 40.0 36.0 41.0 33.0 41.0 30 37.44386312202121 40.0 36.0 41.0 33.0 41.0 31 37.361761279023035 39.0 36.0 41.0 33.0 41.0 32 37.43405064114249 40.0 36.0 41.0 33.0 41.0 33 37.412549528777056 40.0 36.0 41.0 33.0 41.0 34 37.270047362142904 40.0 36.0 41.0 32.0 41.0 35 37.26678008849888 40.0 36.0 41.0 32.0 41.0 36 37.02136359905382 40.0 36.0 41.0 31.0 41.0 37 36.97974183741236 40.0 36.0 41.0 31.0 41.0 38 36.796805427192034 40.0 35.0 41.0 31.0 41.0 39 36.80191154163082 39.0 35.0 41.0 31.0 41.0 40 36.76586173409616 39.0 35.0 41.0 31.0 41.0 41 36.633089966751626 39.0 35.0 41.0 30.0 41.0 42 36.79097443638197 39.0 35.0 41.0 31.0 41.0 43 36.69480892578652 39.0 35.0 41.0 31.0 41.0 44 36.74830480198616 39.0 35.0 41.0 31.0 41.0 45 36.72948146821577 39.0 35.0 41.0 31.0 41.0 46 36.6114097672827 39.0 35.0 41.0 31.0 41.0 47 36.532930174151545 39.0 35.0 41.0 31.0 41.0 48 36.50962433282059 39.0 35.0 41.0 31.0 41.0 49 36.46733419252503 39.0 35.0 41.0 31.0 41.0 50 36.39543605044713 39.0 35.0 41.0 31.0 41.0 51 35.401129527945585 38.0 34.0 40.0 27.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 3.0 8 17.0 9 48.0 10 47.0 11 42.0 12 31.0 13 32.0 14 55.0 15 66.0 16 98.0 17 141.0 18 281.0 19 465.0 20 923.0 21 1508.0 22 2480.0 23 3348.0 24 5174.0 25 7179.0 26 9193.0 27 10268.0 28 10423.0 29 11613.0 30 14015.0 31 17440.0 32 23001.0 33 32564.0 34 53945.0 35 66821.0 36 76899.0 37 115133.0 38 201899.0 39 272855.0 40 84.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.970012504117406 20.73551499801192 25.339972348098428 12.95450014977225 2 33.64129919165625 26.024554121082073 24.003748037237326 16.330398650024357 3 30.73294595087257 24.659974352168394 28.48806778873265 16.119011908226387 4 28.201528423148716 24.611684793905923 29.44938177639483 17.73740500655054 5 24.618080761887708 32.74959465552915 25.167387812056614 17.464936770526528 6 25.274307076818776 34.49249593056537 26.488155200295065 13.745041792320785 7 76.7957479604857 6.026387631903515 12.900347620859808 4.277516786750966 8 77.52137052801913 6.8811021532026215 11.05532405704777 4.542203261730472 9 71.38113466603986 7.894543279916341 13.100861217088747 7.62346083695505 10 36.701130274141846 28.1614470237962 21.666341538294258 13.471081163767696 11 26.65711535448054 25.189667100526496 28.77940413030292 19.373813414690048 12 24.369810604728112 22.226628333498564 32.9448848779063 20.458676183867023 13 23.517867669554445 23.769762208570384 34.85695950606071 17.855410615814456 14 20.203690260326557 27.469403288167136 31.876012028683785 20.45089442282252 15 18.679424490801 27.45757074740084 35.09989968990215 18.76310507189601 16 20.88656644184839 26.61980554125346 31.923128992816263 20.570499024081883 17 21.40250785904566 27.02008653744679 30.267959078596853 21.309446524910697 18 20.98538414716696 26.364713018246633 32.579568506680054 20.070334327906355 19 21.07226271225286 28.39543285246314 30.377969727883542 20.154334707400455 20 22.432685101978382 27.354702262360476 32.11916541145795 18.093447224203196 21 21.90277915468755 28.349808280859744 31.936560525578013 17.810852038874696 22 20.881023269597513 24.898117560023493 31.543954690962817 22.676904479416176 23 19.439585285436063 27.44925598902452 31.49214735031036 21.619011375229054 24 20.488310835515957 26.297875152836987 31.515172835044787 21.69864117660227 25 19.55268731924728 29.420599920476796 29.46046812089659 21.566244639379335 26 19.685083856470214 28.41941773239483 30.980043513902167 20.915454897232785 27 21.099871974040898 28.980450723863676 30.103156303599544 19.816520998495882 28 18.758734493775126 27.647530996459828 32.470304053657905 21.123430456107137 29 21.750555116721085 25.872010284716513 30.941454507078735 21.43598009148366 30 22.833712294436253 26.9022941271156 30.069790670627906 20.194202907820245 31 21.83338290208519 27.358539843149543 29.10240051338303 21.70567674138223 32 22.12312025166002 29.31815783330189 28.48113882341905 20.077583091619044 33 22.899697364114996 27.329651387765153 28.244488008093033 21.526163240026822 34 21.01597819401316 26.466622108089727 29.4768844387165 23.040515259180612 35 22.808128422509117 26.36780440277116 29.031511868251584 21.792555306468138 36 23.595578680533123 27.970847177939028 28.51898163397794 19.91459250754991 37 21.026211742784014 28.241503223034865 30.666321284395647 20.065963749785467 38 20.487244840852327 28.84208461652441 29.178832330765353 21.49183821185791 39 21.767184633473725 27.83280086899885 28.801257020907357 21.598757476620072 40 22.30369974767906 25.396789863669945 29.969267373847526 22.330243014803468 41 20.342376166064913 26.829593291055986 29.451940163587544 23.37609037929156 42 20.947114938742615 26.87308587333212 31.12821677214684 21.051582415778427 43 22.149876717717152 26.790471286900736 29.832926656369157 21.22672533901295 44 21.143151357384305 26.914553065747356 29.035136250107936 22.90715932676041 45 22.054896593187653 25.835233468821254 28.209843181525034 23.90002675646606 46 23.091363204635798 26.918177447603696 28.413661361211222 21.57679798654928 47 20.42552374982811 26.244895218054538 31.615696131825167 21.71388490029219 48 20.744256154253694 25.943431927179773 30.61771192773409 22.694599990832444 49 21.591508712907384 24.843325434312877 31.802458396893265 21.762707455886478 50 20.81184021592788 24.585461325180606 30.499493119537448 24.103205339354073 51 20.47893008247601 24.2812264481804 28.93439975439483 26.305443714948762 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 473.0 1 1032.0 2 1591.0 3 6075.0 4 10559.0 5 7180.0 6 3801.0 7 3754.5 8 3708.0 9 3677.5 10 3647.0 11 3666.5 12 3686.0 13 3686.5 14 3687.0 15 3597.5 16 3508.0 17 3524.0 18 3540.0 19 3751.5 20 3963.0 21 4373.5 22 4784.0 23 5286.5 24 5789.0 25 7174.0 26 9749.5 27 10940.0 28 12265.0 29 13590.0 30 16278.0 31 18966.0 32 20449.5 33 21933.0 34 26128.0 35 30323.0 36 32815.5 37 35308.0 38 36418.5 39 37529.0 40 42071.5 41 46614.0 42 51830.5 43 57047.0 44 61965.0 45 66883.0 46 81692.5 47 96502.0 48 96538.0 49 96574.0 50 94493.5 51 92413.0 52 80142.0 53 67871.0 54 57984.5 55 48098.0 56 42238.5 57 36379.0 58 32592.0 59 28805.0 60 26605.5 61 24406.0 62 21295.5 63 18185.0 64 14783.0 65 11381.0 66 9152.5 67 6924.0 68 5650.0 69 4376.0 70 3512.0 71 2648.0 72 2083.5 73 1519.0 74 1116.0 75 620.5 76 528.0 77 380.0 78 232.0 79 154.5 80 77.0 81 45.5 82 14.0 83 10.5 84 7.0 85 5.0 86 3.0 87 5.0 88 7.0 89 4.0 90 1.0 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 938091.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 33.64834459464869 #Duplication Level Percentage of deduplicated Percentage of total 1 74.03467909562367 24.911443941637792 2 10.995554409745923 7.399644075766795 3 4.000656684754926 4.038464242005557 4 2.004336236596823 2.697703854902048 5 1.205454110714247 2.0280767655174388 6 0.7819805989308747 1.5787411595493506 7 0.6022431454962016 1.4185139422594937 8 0.4574582235730916 1.2314169555554584 9 0.4186284451493629 1.2677538761556977 >10 5.081295733860784 39.11084173078116 >50 0.36745972564074747 7.606481593672076 >100 0.0438518587142051 2.735569545041596 >500 0.0035209521595314765 0.9153748400841176 >1k 0.0025606924796592557 2.379823798858532 >5k 3.2008655995740697E-4 0.6801496782128724 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6315 0.6731756300827958 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGCCG 4099 0.43695121262222963 No Hit GAATCTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGCCGTCTTC 4017 0.4282100563804577 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGC 3608 0.38461087463796156 No Hit GCTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGCCGTCTTCTGC 2984 0.318092807627405 TruSeq Adapter, Index 13 (95% over 21bp) CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGCC 2560 0.2728946338894628 No Hit CCTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGCCGTCTTCTGC 1908 0.20339178182074022 TruSeq Adapter, Index 13 (95% over 21bp) CTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGCCGTCTTCTGCT 1793 0.191132843188987 TruSeq Adapter, Index 16 (95% over 22bp) TCTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGCCGTCTTCTGC 1127 0.12013759859118146 TruSeq Adapter, Index 13 (95% over 21bp) GAACTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGCCGTCTTCT 974 0.10382788023763152 No Hit GAATGACTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGCCGTCT 972 0.10361468130490538 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.0659946636307138E-4 0.0 0.0 0.19838160690167586 0.0 2 1.0659946636307138E-4 0.0 0.0 0.9468164602368001 0.0 3 1.0659946636307138E-4 0.0 0.0 1.2997672933649294 0.0 4 1.0659946636307138E-4 0.0 0.0 1.8266884555975913 0.0 5 1.0659946636307138E-4 0.0 0.0 3.4069189449637616 0.0 6 1.0659946636307138E-4 0.0 0.0 4.218780480784913 0.0 7 1.0659946636307138E-4 0.0 0.0 5.073068604218567 0.0 8 1.0659946636307138E-4 0.0 0.0 6.239799763562384 0.0 9 1.0659946636307138E-4 0.0 0.0 6.688903315350004 0.0 10 1.0659946636307138E-4 0.0 0.0 8.237900161071794 0.0 11 1.0659946636307138E-4 0.0 0.0 10.065228213467563 0.0 12 1.0659946636307138E-4 0.0 0.0 11.751311972932264 0.0 13 1.0659946636307138E-4 0.0 0.0 12.32140591904197 0.0 14 1.0659946636307138E-4 0.0 0.0 12.56157451675797 0.0 15 1.0659946636307138E-4 0.0 0.0 13.014728848267385 0.0 16 1.0659946636307138E-4 0.0 0.0 13.801326310560489 0.0 17 1.0659946636307138E-4 0.0 0.0 14.787691172817988 0.0 18 1.0659946636307138E-4 0.0 0.0 15.823837985867042 0.0 19 1.0659946636307138E-4 0.0 0.0 16.59146074314752 0.0 20 1.0659946636307138E-4 0.0 0.0 17.23734690984137 0.0 21 2.1319893272614277E-4 0.0 0.0 18.02138598494176 0.0 22 2.1319893272614277E-4 0.0 0.0 18.86277557294548 0.0 23 2.1319893272614277E-4 0.0 0.0 19.661098976538522 0.0 24 2.1319893272614277E-4 0.0 0.0 20.28992922861428 0.0 25 2.1319893272614277E-4 0.0 0.0 20.84691144036133 0.0 26 2.1319893272614277E-4 0.0 0.0 21.371167615934915 0.0 27 2.1319893272614277E-4 0.0 0.0 21.88636283686764 0.0 28 2.1319893272614277E-4 0.0 0.0 22.429380518521125 0.0 29 2.1319893272614277E-4 0.0 0.0 22.98273834841183 0.0 30 2.1319893272614277E-4 0.0 0.0 23.568822214475993 0.0 31 2.1319893272614277E-4 0.0 0.0 24.14659132216384 0.0 32 2.1319893272614277E-4 0.0 0.0 24.688116611288244 0.0 33 2.1319893272614277E-4 0.0 0.0 25.22910890308083 0.0 34 2.1319893272614277E-4 0.0 0.0 25.75762905730894 0.0 35 2.1319893272614277E-4 0.0 0.0 26.30437772028513 0.0 36 2.1319893272614277E-4 0.0 0.0 26.841212632889558 0.0 37 2.1319893272614277E-4 0.0 0.0 27.36941298871858 0.0 38 3.1979839908921414E-4 0.0 0.0 27.897293546148507 0.0 39 3.1979839908921414E-4 0.0 0.0 28.43679344541201 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TACGACG 30 2.165074E-6 45.000004 1 TTCGGTA 25 3.8902544E-5 45.000004 25 CCAACGG 25 3.8902544E-5 45.000004 2 TATCCGA 25 3.8902544E-5 45.000004 2 GTACCCG 20 7.0326234E-4 45.0 22 TTTCGGC 20 7.0326234E-4 45.0 24 GTTCGAC 20 7.0326234E-4 45.0 12 CAATGCG 35 1.2116107E-7 45.0 1 CGACTAA 20 7.0326234E-4 45.0 29 CGTTATT 205 0.0 42.80488 1 TAGTGCG 65 0.0 41.538464 1 CGTTTTT 3410 0.0 41.370968 1 CCCCGAT 50 1.0804797E-9 40.500004 40 CGTAAGG 130 0.0 39.807693 2 CGTTGAT 40 3.4573168E-7 39.375 25 TGCGTAG 80 0.0 39.375 1 CGGGATC 225 0.0 39.000004 6 CGGTCTA 35 6.247061E-6 38.571426 31 CGCCACG 35 6.247061E-6 38.571426 16 ATCGAAT 65 9.094947E-12 38.076927 43 >>END_MODULE