SRR3551319_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551319_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	888647
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5232	0.5887602163738808	No Hit
GCTGTCTCTTATACACATCTGACGCCATGGTTGTCGTATGCCGTCTTCTGC	4721	0.5312570683297192	TruSeq Adapter, Index 22 (95% over 22bp)
GAATGATACCTGTCTCTTATACACATCTGACGCCATGGTTGTCGTATGCCG	4228	0.4757794714886789	No Hit
GAATCTGTCTCTTATACACATCTGACGCCATGGTTGTCGTATGCCGTCTTC	3980	0.4478718771345653	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCATGGTTGTCGTATGC	3729	0.4196266909132647	No Hit
CTGTCTCTTATACACATCTGACGCCATGGTTGTCGTATGCCGTCTTCTGCT	2677	0.30124447615307315	TruSeq Adapter, Index 23 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCCATGGTTGTCGTATGCCGTCTTCTGC	2288	0.25747006404117717	TruSeq Adapter, Index 22 (95% over 22bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCATGGTTGTCGTATGCC	2251	0.2533064310125393	No Hit
TCTGTCTCTTATACACATCTGACGCCATGGTTGTCGTATGCCGTCTTCTGC	1735	0.19524062985639967	TruSeq Adapter, Index 22 (95% over 22bp)
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1367	0.15382936081481174	No Hit
AGCTACCATTACATTTATTATTTTACTTCTACTCACAATTCTAGAATTTGC	1297	0.14595221724711838	No Hit
ACTGTCTCTTATACACATCTGACGCCATGGTTGTCGTATGCCGTCTTCTGC	1144	0.12873503202058859	TruSeq Adapter, Index 23 (95% over 21bp)
GAATGACTGTCTCTTATACACATCTGACGCCATGGTTGTCGTATGCCGTCT	1079	0.12142054156487334	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCATGGTTGT	947	0.10656649940865158	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGTCCCG	30	2.164943E-6	45.000004	17
CGACGTT	35	1.2115197E-7	45.000004	27
CGATTGC	35	1.2115197E-7	45.000004	10
CCTGTCG	35	1.2115197E-7	45.000004	40
TATAGCG	30	2.164943E-6	45.000004	1
TCGACGT	35	1.2115197E-7	45.000004	26
CGAGTAT	20	7.032422E-4	45.0	32
ATTACGT	25	3.8900893E-5	45.0	13
TAGCCGT	25	3.8900893E-5	45.0	44
CGTACTC	20	7.032422E-4	45.0	22
ACGTCCA	25	3.8900893E-5	45.0	16
ACGTACG	20	7.032422E-4	45.0	1
CCACGCG	20	7.032422E-4	45.0	1
TAATGCG	20	7.032422E-4	45.0	1
ATACCGA	25	3.8900893E-5	45.0	25
TACGTCC	25	3.8900893E-5	45.0	15
AATCGCT	20	7.032422E-4	45.0	32
GTACGAG	40	6.8121153E-9	45.0	1
CGTTAGG	100	0.0	42.75	2
CGCACGG	90	0.0	42.5	2