SRR3551315_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551315_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	811768
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCG	7665	0.9442352987553094	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTTC	6007	0.7399897507662287	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGC	5269	0.6490770762089662	No Hit
GCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTTCTGC	3407	0.4197011954154389	TruSeq Adapter, Index 14 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3311	0.4078751564486405	No Hit
CCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTTCTGC	2010	0.2476076908673414	TruSeq Adapter, Index 14 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTTCTGCT	1843	0.22703531058134835	TruSeq Adapter, Index 21 (95% over 22bp)
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTGCGTGTTT	1803	0.22210779434518238	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCT	1481	0.18244128864404607	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCC	1454	0.17911521518463402	No Hit
GAACTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTTCT	1256	0.15472400981561235	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTA	1245	0.15336894285066668	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTC	1242	0.15299937913295425	No Hit
GAATGCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTT	1048	0.12910092538754914	No Hit
TCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTTCTGC	838	0.10323146514767767	TruSeq Adapter, Index 14 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAGCGCG	30	2.1647102E-6	45.000004	1
GTACGAG	30	2.1647102E-6	45.000004	1
CTAGACG	25	3.8897902E-5	45.0	1
CGAAACG	20	7.0320605E-4	45.0	12
TAGACGG	75	0.0	45.0	2
ACCGCAT	20	7.0320605E-4	45.0	14
ACGGGTC	45	3.8380676E-10	45.0	5
AGTATCG	20	7.0320605E-4	45.0	1
TTGCGAC	25	3.8897902E-5	45.0	29
CGTGTTA	20	7.0320605E-4	45.0	31
CGTAAGC	50	2.1827873E-11	45.0	43
CCGGTTG	20	7.0320605E-4	45.0	19
CGATCGA	45	3.8380676E-10	45.0	41
CGATACC	20	7.0320605E-4	45.0	44
AGTACGG	55	1.8189894E-12	45.0	2
CGATGAA	1130	0.0	41.615047	19
CCGATGA	1115	0.0	41.367714	18
ACACGAC	60	3.6379788E-12	41.250004	26
ACTACGG	55	6.002665E-11	40.909092	2
GATGAAT	1255	0.0	40.51793	20