##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551315_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 811768 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.631287510717346 31.0 31.0 34.0 30.0 34.0 2 31.77313592060786 31.0 31.0 34.0 30.0 34.0 3 31.72406278641188 33.0 31.0 34.0 30.0 34.0 4 35.431491509889526 37.0 35.0 37.0 33.0 37.0 5 33.45832429955357 37.0 35.0 37.0 30.0 37.0 6 34.333685240117866 37.0 35.0 37.0 30.0 37.0 7 35.39982236303969 37.0 35.0 37.0 32.0 37.0 8 35.24048003863173 37.0 35.0 37.0 32.0 37.0 9 37.022009983147896 39.0 37.0 39.0 33.0 39.0 10 36.60735579623735 38.0 35.0 39.0 32.0 39.0 11 36.728297986616866 39.0 35.0 39.0 33.0 39.0 12 36.696193986459186 39.0 35.0 39.0 33.0 39.0 13 36.793546924737115 39.0 35.0 39.0 33.0 39.0 14 37.79589488622365 40.0 37.0 41.0 33.0 41.0 15 37.881665697588474 40.0 37.0 41.0 33.0 41.0 16 37.986386504518535 40.0 37.0 41.0 33.0 41.0 17 37.807485636290174 40.0 36.0 41.0 33.0 41.0 18 37.79415916862946 39.0 36.0 41.0 33.0 41.0 19 37.70452395265642 39.0 36.0 41.0 33.0 41.0 20 37.76247770298903 40.0 36.0 41.0 33.0 41.0 21 37.70069650441998 39.0 36.0 41.0 33.0 41.0 22 37.80417311350041 40.0 36.0 41.0 33.0 41.0 23 37.85978506174178 40.0 36.0 41.0 33.0 41.0 24 37.739509317933205 40.0 36.0 41.0 33.0 41.0 25 37.487506282583205 39.0 35.0 41.0 33.0 41.0 26 37.53124784421165 39.0 36.0 41.0 33.0 41.0 27 37.13232844852224 39.0 35.0 41.0 32.0 41.0 28 37.17256900986489 39.0 35.0 41.0 32.0 41.0 29 37.432645780567846 40.0 35.0 41.0 32.0 41.0 30 37.16114456347134 39.0 35.0 41.0 32.0 41.0 31 37.214186811995546 39.0 35.0 41.0 32.0 41.0 32 37.204985907303566 39.0 35.0 41.0 32.0 41.0 33 37.156920450177886 40.0 35.0 41.0 32.0 41.0 34 37.03707709591903 40.0 35.0 41.0 32.0 41.0 35 37.00764873707759 40.0 35.0 41.0 32.0 41.0 36 36.788275714243476 39.0 35.0 41.0 31.0 41.0 37 36.78906658059938 39.0 35.0 41.0 31.0 41.0 38 36.641521961939866 39.0 35.0 41.0 31.0 41.0 39 36.53373377615279 39.0 35.0 41.0 31.0 41.0 40 36.431963319569135 39.0 35.0 41.0 30.0 41.0 41 36.30537296370392 39.0 35.0 40.0 30.0 41.0 42 36.452647800849505 39.0 35.0 41.0 31.0 41.0 43 36.39810265987327 39.0 35.0 41.0 31.0 41.0 44 36.52052926451893 39.0 35.0 41.0 31.0 41.0 45 36.50332730533847 39.0 35.0 41.0 31.0 41.0 46 36.38952262222704 39.0 35.0 41.0 31.0 41.0 47 36.27186708517704 39.0 35.0 41.0 31.0 41.0 48 36.25335687043589 39.0 35.0 41.0 31.0 41.0 49 36.224054163258465 39.0 35.0 41.0 31.0 41.0 50 36.11679322170867 39.0 35.0 40.0 30.0 41.0 51 35.20375033260735 37.0 34.0 40.0 27.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 2.0 8 22.0 9 32.0 10 51.0 11 35.0 12 42.0 13 41.0 14 58.0 15 71.0 16 104.0 17 151.0 18 252.0 19 543.0 20 1172.0 21 2123.0 22 3369.0 23 4343.0 24 5255.0 25 6045.0 26 7006.0 27 7874.0 28 8449.0 29 9761.0 30 12318.0 31 16099.0 32 21867.0 33 31544.0 34 55562.0 35 64300.0 36 68093.0 37 101263.0 38 168668.0 39 215187.0 40 66.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.3301534428556 20.018897024765696 23.24543465620719 12.405514876171516 2 31.716451005706066 28.561978299218495 23.326985049915738 16.3945856451597 3 31.366474165032376 27.092839333405607 26.09735786579417 15.443328635767855 4 28.10261059810192 23.557223246050597 30.24386277852786 18.09630337731963 5 27.37740339604419 31.8094578746637 23.07469621862404 17.738442510668072 6 25.337904425895086 36.23412107892896 24.124133989021495 14.303840506154467 7 75.10803579347794 6.132909895438106 14.173138137990165 4.58591617309379 8 75.4628169624819 9.827438381409467 9.771018320505366 4.938726335603276 9 69.55768150506057 7.812084240817574 11.618220969538093 11.012013284583773 10 42.9588256743306 24.219481428191305 18.527337860078248 14.294355037399848 11 32.62311399316061 23.846222073301732 24.79193562692789 18.73872830660977 12 29.199598900178376 20.905234007746056 28.15804515575879 21.73712193631678 13 26.880956135250468 22.582190970819248 30.65728139074218 19.879571503188103 14 20.198381803668042 28.781868711257403 28.104581604596383 22.915167880478165 15 19.06111105636093 25.59807728316465 34.02314454376127 21.31766711671315 16 22.387923643208403 24.369154733864846 29.76453863665481 23.47838298627194 17 21.765208778862927 26.711449576726352 28.92390436676489 22.59943727764583 18 22.461836386750893 25.34073774773088 28.932404332272277 23.265021533245953 19 24.417690768791083 26.219190704733368 26.268589055000934 23.09452947147461 20 26.980615151126923 25.848887859585496 29.312931773610195 17.857565215677383 21 24.81497176533197 27.759409092252955 28.15607414926432 19.269544993150753 22 21.957135536261593 24.312488297148942 29.709720018527463 24.02065614806201 23 24.335524435553015 25.696011668358448 28.496072769559778 21.472391126528763 24 23.3347458879877 25.41292586059071 28.411196302391815 22.841131949029773 25 22.751081589813836 28.723231268047027 26.34225542273162 22.183431719407515 26 21.3814784519715 26.49451567442915 29.437597934385195 22.68640793921416 27 24.455386267997753 26.690630820628552 27.36717879985415 21.486804111519547 28 20.02283903775463 27.94037212602615 29.915813385105107 22.120975451114113 29 23.511397345054252 23.750874634131918 30.856845798306903 21.880882222506923 30 23.313680756078092 27.07941185166205 28.32434882872939 21.28255856353047 31 23.85188871697332 25.669526268589056 25.50075883750037 24.977826176937253 32 27.294744311182505 25.845315410314278 26.539602447990067 20.320337830513154 33 24.687349094815268 25.065289590129197 26.79312315834081 23.454238156714727 34 23.156616176050303 23.978402696336882 29.33510559667294 23.529875530939876 35 24.519197603256103 22.97134156557046 29.30307674113786 23.206384090035577 36 22.66534280730455 26.707753939549228 28.2325738388308 22.39432941431542 37 24.797848646411293 25.560628159769788 28.362044327936058 21.279478865882865 38 22.580096776418877 24.713095367149236 27.893067970158963 24.813739886272927 39 25.803924273930484 23.78561362359689 28.530565383212934 21.87989671925969 40 23.568802909205587 22.304525430911294 31.727168353519726 22.399503306363393 41 21.01154517054134 24.458835529363068 30.022370923712195 24.5072483763834 42 21.727143715938542 24.06943855880005 31.142395364192726 23.06102236106868 43 23.19135516551527 24.426683485922084 28.96492593943097 23.417035409131675 44 23.55623774280336 23.72771530782194 28.590804269200063 24.12524268017463 45 22.810581348365545 22.452350917996274 28.24513900523302 26.491928728405163 46 24.211843778025248 25.750214346956273 27.629199475712273 22.408742399306206 47 21.20248642469277 25.278897418966995 31.903819810586278 21.61479634575396 48 22.11444649210119 22.906051975441258 30.109341585280525 24.870159947177026 49 22.020946871519943 23.015073272166433 31.966399266785583 22.997580589528045 50 21.776295690394303 22.877472381271495 30.14161681662741 25.20461511170679 51 21.0401247647111 22.8656463423047 29.059657439071263 27.034571453912942 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 296.0 1 870.0 2 1444.0 3 3675.0 4 5906.0 5 4069.0 6 2232.0 7 2145.0 8 2058.0 9 2046.0 10 2034.0 11 2043.5 12 2053.0 13 2017.0 14 1981.0 15 1965.0 16 1949.0 17 2077.5 18 2206.0 19 2027.5 20 1849.0 21 2307.5 22 2766.0 23 3063.5 24 3361.0 25 4162.5 26 6127.0 27 7290.0 28 8498.0 29 9706.0 30 11485.0 31 13264.0 32 14647.5 33 16031.0 34 17590.5 35 19150.0 36 21272.0 37 23394.0 38 25252.5 39 27111.0 40 30538.0 41 33965.0 42 37180.0 43 40395.0 44 44112.5 45 47830.0 46 66097.0 47 84364.0 48 79747.5 49 75131.0 50 72875.0 51 70619.0 52 63228.0 53 55837.0 54 52042.0 55 48247.0 56 44660.5 57 41074.0 58 39195.0 59 37316.0 60 37308.5 61 37301.0 62 33862.0 63 30423.0 64 26115.0 65 21807.0 66 17625.5 67 13444.0 68 11521.0 69 9598.0 70 7616.0 71 5634.0 72 4479.5 73 3325.0 74 2734.0 75 1771.0 76 1399.0 77 955.0 78 511.0 79 362.5 80 214.0 81 158.0 82 102.0 83 66.5 84 31.0 85 19.0 86 7.0 87 4.0 88 1.0 89 2.5 90 4.0 91 2.0 92 0.0 93 0.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 811768.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 27.693483309585915 #Duplication Level Percentage of deduplicated Percentage of total 1 74.53487009305042 20.64130180904046 2 10.046895276594103 5.564670533110327 3 3.5992224136281115 2.990250175178929 4 1.7437652739418177 1.9316373803897298 5 1.0701898744867795 1.4818642713593737 6 0.7001499967051076 1.1633755348775718 7 0.5405031737838817 1.0477890935373502 8 0.4283385573327901 0.9489749350678185 9 0.3770799828430102 0.9398392390117662 >10 6.175794823981094 43.20855912674299 >50 0.7236340208096674 12.207874200128115 >100 0.0523918195688482 2.841555310067783 >500 8.955866592965505E-4 0.190850729780672 >1k 0.004925726626131027 2.492592377252441 >5k 0.0013433799889448256 2.348865284454651 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GAATGATACCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCG 7665 0.9442352987553094 No Hit GAATCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTTC 6007 0.7399897507662287 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGC 5269 0.6490770762089662 No Hit GCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTTCTGC 3407 0.4197011954154389 TruSeq Adapter, Index 14 (95% over 21bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3311 0.4078751564486405 No Hit CCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTTCTGC 2010 0.2476076908673414 TruSeq Adapter, Index 14 (95% over 21bp) CTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTTCTGCT 1843 0.22703531058134835 TruSeq Adapter, Index 21 (95% over 22bp) GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTGCGTGTTT 1803 0.22210779434518238 No Hit GAATGACTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCT 1481 0.18244128864404607 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCC 1454 0.17911521518463402 No Hit GAACTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTTCT 1256 0.15472400981561235 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTA 1245 0.15336894285066668 No Hit GAATGATCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTC 1242 0.15299937913295425 No Hit GAATGCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTT 1048 0.12910092538754914 No Hit TCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTTCTGC 838 0.10323146514767767 TruSeq Adapter, Index 14 (95% over 21bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.2318790590414995E-4 0.0 0.0 0.23368745750017247 0.0 2 1.2318790590414995E-4 0.0 0.0 1.1009303150653882 0.0 3 1.2318790590414995E-4 0.0 0.0 1.3773639759143006 0.0 4 1.2318790590414995E-4 0.0 0.0 1.8415360053611376 0.0 5 1.2318790590414995E-4 0.0 0.0 3.429674488277439 0.0 6 1.2318790590414995E-4 0.0 0.0 4.1005558238314395 0.0 7 1.2318790590414995E-4 0.0 0.0 4.819973194311675 0.0 8 1.2318790590414995E-4 0.0 0.0 5.711730445151817 0.0 9 1.2318790590414995E-4 0.0 0.0 6.029555242384523 0.0 10 1.2318790590414995E-4 0.0 0.0 7.692099220466932 0.0 11 1.2318790590414995E-4 0.0 0.0 8.824319263631974 0.0 12 1.2318790590414995E-4 0.0 0.0 10.310950912083255 0.0 13 1.2318790590414995E-4 0.0 0.0 10.702195701234835 0.0 14 1.2318790590414995E-4 0.0 0.0 10.893999270727598 0.0 15 1.2318790590414995E-4 0.0 0.0 11.332917779464083 0.0 16 1.2318790590414995E-4 0.0 0.0 11.888248859279992 0.0 17 1.2318790590414995E-4 0.0 0.0 12.526978151393008 0.0 18 1.2318790590414995E-4 0.0 0.0 13.164845128164698 0.0 19 1.2318790590414995E-4 0.0 0.0 13.82303810941057 0.0 20 1.2318790590414995E-4 0.0 0.0 14.266637758571415 0.0 21 1.2318790590414995E-4 0.0 0.0 14.763577770988755 0.0 22 1.2318790590414995E-4 0.0 0.0 15.319771166145992 0.0 23 1.2318790590414995E-4 0.0 0.0 15.798848932207232 0.0 24 1.2318790590414995E-4 0.0 0.0 16.21497767835145 0.0 25 1.2318790590414995E-4 0.0 0.0 16.596244247124794 0.0 26 1.2318790590414995E-4 0.0 0.0 16.958663066294804 0.0 27 1.2318790590414995E-4 0.0 0.0 17.3295818509722 0.0 28 1.2318790590414995E-4 0.0 0.0 17.682392013481685 0.0 29 1.2318790590414995E-4 0.0 0.0 18.03581811552069 0.0 30 1.2318790590414995E-4 0.0 0.0 18.414128174552335 0.0 31 1.2318790590414995E-4 0.0 0.0 18.785416522947443 0.0 32 1.2318790590414995E-4 0.0 0.0 19.136994806397887 0.0 33 1.2318790590414995E-4 0.0 0.0 19.496087552108484 0.0 34 1.2318790590414995E-4 0.0 0.0 19.8438470104759 0.0 35 1.2318790590414995E-4 0.0 0.0 20.2237585122843 0.0 36 1.2318790590414995E-4 0.0 0.0 20.603546826186793 0.0 37 1.2318790590414995E-4 0.0 0.0 20.95586423707266 0.0 38 1.2318790590414995E-4 0.0 0.0 21.313725103724217 0.0 39 1.2318790590414995E-4 0.0 0.0 21.699180061298303 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAGCGCG 30 2.1647102E-6 45.000004 1 GTACGAG 30 2.1647102E-6 45.000004 1 CTAGACG 25 3.8897902E-5 45.0 1 CGAAACG 20 7.0320605E-4 45.0 12 TAGACGG 75 0.0 45.0 2 ACCGCAT 20 7.0320605E-4 45.0 14 ACGGGTC 45 3.8380676E-10 45.0 5 AGTATCG 20 7.0320605E-4 45.0 1 TTGCGAC 25 3.8897902E-5 45.0 29 CGTGTTA 20 7.0320605E-4 45.0 31 CGTAAGC 50 2.1827873E-11 45.0 43 CCGGTTG 20 7.0320605E-4 45.0 19 CGATCGA 45 3.8380676E-10 45.0 41 CGATACC 20 7.0320605E-4 45.0 44 AGTACGG 55 1.8189894E-12 45.0 2 CGATGAA 1130 0.0 41.615047 19 CCGATGA 1115 0.0 41.367714 18 ACACGAC 60 3.6379788E-12 41.250004 26 ACTACGG 55 6.002665E-11 40.909092 2 GATGAAT 1255 0.0 40.51793 20 >>END_MODULE