SRR3551309_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551309_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	810510
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5354	0.6605717387817547	No Hit
GCTGTCTCTTATACACATCTGACGCCCGGATAATCGTATGCCGTCTTCTGC	2361	0.2912980715845579	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCCGGATAATCGTATGCCG	1863	0.22985527630751007	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCCGGATAATCGTATGCC	1641	0.20246511455750082	No Hit
GAATCTGTCTCTTATACACATCTGACGCCCGGATAATCGTATGCCGTCTTC	1623	0.20024429063182442	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCCGGATAATCGTATGC	1600	0.1974065711712379	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1470	0.1813672872635748	No Hit
CTGTCTCTTATACACATCTGACGCCCGGATAATCGTATGCCGTCTTCTGCT	1388	0.17125020049104886	No Hit
CCTGTCTCTTATACACATCTGACGCCCGGATAATCGTATGCCGTCTTCTGC	1352	0.166808552639696	No Hit
CAAGGAAGGTGAAATAATCTATATCTTTTATTTTGTTTTGGTTTAATATAA	1283	0.15829539425793634	No Hit
AGCTACCATTACATTTATTATTTTACTTCTACTCACAATTCTAGAATTTGC	1169	0.14423017606198565	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1115	0.13756770428495638	No Hit
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1017	0.12547655180071807	No Hit
TCTGTCTCTTATACACATCTGACGCCCGGATAATCGTATGCCGTCTTCTGC	855	0.10548913646963023	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTTGACG	20	7.0320553E-4	45.0	10
CGCATCG	25	3.8897848E-5	45.0	21
GGCGTAT	20	7.0320553E-4	45.0	33
GGTATCG	20	7.0320553E-4	45.0	12
CGAATCA	25	3.8897848E-5	45.0	43
AATTCGC	20	7.0320553E-4	45.0	37
CGGCTAT	25	3.8897848E-5	45.0	28
CCGAAAC	20	7.0320553E-4	45.0	29
TGTAACG	40	6.8102963E-9	45.0	1
TACGTAT	20	7.0320553E-4	45.0	37
TGCGTAA	20	7.0320553E-4	45.0	26
CTACGCG	30	2.1647065E-6	44.999996	33
CGTAAGG	115	0.0	41.086956	2
TCGTAAG	50	1.0804797E-9	40.5	1
GGCGTAG	70	0.0	38.571426	1
ACTACGC	35	6.2460113E-6	38.571426	32
TTACGAG	35	6.2460113E-6	38.571426	1
TTAATCG	60	1.546141E-10	37.499996	20
TTTCGGC	30	1.1396251E-4	37.499996	25
TAGCCGT	30	1.1396251E-4	37.499996	44