SRR3551307_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551307_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	556901
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCGTGCAGTATCGTATGCCG	4351	0.7812878770194343	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTGCAGTATCGTATGC	4267	0.7662044061691395	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTGCAGTATCGTATGCCGTCTTC	3741	0.6717531482256272	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2707	0.48608280466366555	No Hit
GCTGTCTCTTATACACATCTGACGCGTGCAGTATCGTATGCCGTCTTCTGC	1812	0.3253720140563583	TruSeq Adapter, Index 15 (95% over 23bp)
CAAGGAAGGTGAAATAATCTATATCTTTTATTTTGTTTTGGTTTAATATAA	1320	0.23702597050463187	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGTGCAGTAT	1232	0.2212242391376564	No Hit
CTGTCTCTTATACACATCTGACGCGTGCAGTATCGTATGCCGTCTTCTGCT	917	0.1646612234490511	TruSeq Adapter, Index 14 (95% over 22bp)
GAATGACTGTCTCTTATACACATCTGACGCGTGCAGTATCGTATGCCGTCT	908	0.1630451372865195	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGTGCAGTATCGTA	899	0.16142905112398792	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTGCAGTATCGTATGCC	877	0.15747861828224408	No Hit
CCTGTCTCTTATACACATCTGACGCGTGCAGTATCGTATGCCGTCTTCTGC	870	0.15622166237805282	TruSeq Adapter, Index 15 (95% over 23bp)
GAACTGTCTCTTATACACATCTGACGCGTGCAGTATCGTATGCCGTCTTCT	792	0.14221558230277914	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGTGCAGTATCGTATGCCGTC	711	0.1276708068399949	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	692	0.12425906938576158	No Hit
AAGGAAGGTGAAATAATCTATATCTTTTATTTTGTTTTGGTTTAATATAAC	595	0.10684125185625452	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTAACG	25	3.8882063E-5	45.000004	1
ACGATCG	35	1.2104283E-7	45.000004	40
GCTAGGT	25	3.8882063E-5	45.000004	21
TATAGCG	35	1.2104283E-7	45.000004	1
ATAACGC	25	3.8882063E-5	45.000004	11
CCTATCG	25	3.8882063E-5	45.000004	40
TACGTCG	25	3.8882063E-5	45.000004	1
CGTATCT	20	7.0301513E-4	45.0	23
TACGAAC	20	7.0301513E-4	45.0	22
GTTCCGT	20	7.0301513E-4	45.0	30
TAGATCG	20	7.0301513E-4	45.0	1
TTTGCGC	20	7.0301513E-4	45.0	13
CGATCGA	90	0.0	45.0	41
TCGAATA	20	7.0301513E-4	45.0	44
CGAAGTT	20	7.0301513E-4	45.0	37
TTGTGCG	30	2.1634787E-6	44.999996	1
CGACAAA	30	2.1634787E-6	44.999996	12
TACGGCT	550	0.0	42.545456	7
TTAGCGG	65	0.0	41.53846	2
CGGCGAA	60	3.6379788E-12	41.249996	31